Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BBY entry

There are 4 chains in PDB entry 8BBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 4	VAL 316
B	ALA 1	MET 416
C	ASP 3	VAL 316
D	ALA 4	SER 415

There are 40 helices in PDB entry 8BBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	30	Right-handed alpha
Helix 2	AA2	A	69	79	Right-handed alpha
Helix 3	AA3	A	265	272	Right-handed alpha
Helix 4	AA4	A	276	288	Right-handed alpha
Helix 5	AA5	B	21	41	Right-handed alpha
Helix 6	AA6	B	49	62	Right-handed alpha
Helix 7	AA7	B	92	99	Right-handed alpha
Helix 8	AA8	B	112	124	Right-handed alpha
Helix 9	AA9	B	147	157	Right-handed alpha
Helix 10	AB1	B	168	181	Right-handed alpha
Helix 11	AB2	B	194	206	Right-handed alpha
Helix 12	AB3	B	236	243	Right-handed alpha
Helix 13	AB4	B	258	270	Right-handed alpha
Helix 14	AB5	B	280	291	Right-handed alpha
Helix 15	AB6	B	291	296	Right-handed alpha
Helix 16	AB7	B	321	332	Right-handed alpha
Helix 17	AB8	B	354	357	Right-handed 310
Helix 18	AB9	B	358	363	Right-handed alpha
Helix 19	AC1	B	376	387	Right-handed alpha
Helix 20	AC2	B	403	414	Right-handed alpha
Helix 21	AC3	C	20	25	Right-handed alpha
Helix 22	AC4	C	72	77	Right-handed alpha
Helix 23	AC5	C	265	271	Right-handed alpha
Helix 24	AC6	C	276	288	Right-handed alpha
Helix 25	AC7	D	21	41	Right-handed alpha
Helix 26	AC8	D	49	62	Right-handed alpha
Helix 27	AC9	D	92	99	Right-handed alpha
Helix 28	AD1	D	112	123	Right-handed alpha
Helix 29	AD2	D	147	157	Right-handed alpha
Helix 30	AD3	D	168	181	Right-handed alpha
Helix 31	AD4	D	194	206	Right-handed alpha
Helix 32	AD5	D	236	244	Right-handed alpha
Helix 33	AD6	D	258	270	Right-handed alpha
Helix 34	AD7	D	280	291	Right-handed alpha
Helix 35	AD8	D	317	320	Right-handed 310
Helix 36	AD9	D	321	333	Right-handed alpha
Helix 37	AE1	D	354	357	Right-handed 310
Helix 38	AE2	D	358	363	Right-handed alpha
Helix 39	AE3	D	376	387	Right-handed alpha
Helix 40	AE4	D	403	415	Right-handed alpha

There are 13 sheets in PDB entry 8BBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	85	89	anti-parallel
Strand 4	A	245	249	anti-parallel
Strand 5	A	12	17	parallel
Strand 6	B	4	5	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	257	first strand
Strand 2	B	13	19	parallel
Strand 3	A	304	309	anti-parallel
Strand 4	A	299	301	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	313	314	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	394	398	parallel
Strand 3	B	307	311	parallel
Strand 4	B	368	370	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	77	82	parallel
Strand 3	B	136	140	parallel
Strand 4	B	160	164	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	186	191	parallel
Strand 3	B	247	250	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	245	249	parallel
Strand 3	C	86	89	anti-parallel
Strand 4	C	41	44	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	257	first strand
Strand 2	D	13	19	parallel
Strand 3	C	304	309	anti-parallel
Strand 4	C	299	301	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	313	314	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	394	398	parallel
Strand 3	D	307	311	parallel
Strand 4	D	368	370	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	77	82	parallel
Strand 3	D	132	140	parallel
Strand 4	D	159	164	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	228	first strand
Strand 2	D	186	191	parallel
Strand 3	D	247	251	parallel
Strand 4	D	274	276	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BBY