Analysis of interatomic Contacts of Structural Units in PDB entry:
8BC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BC0 entry

There are 2 chains in PDB entry 8BC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 50ARG 870
B
 PRO 50ARG 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8BC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 109Right-handed alpha
Helix 2
AA2
A
131 142Right-handed alpha
Helix 3
AA3
A
205 219Right-handed alpha
Helix 4
AA4
A
234 239Right-handed alpha
Helix 5
AA5
A
265 272Right-handed alpha
Helix 6
AA6
A
284 292Right-handed alpha
Helix 7
AA7
A
293 328Right-handed alpha
Helix 8
AA8
A
331 338Right-handed alpha
Helix 9
AA9
A
342 346Right-handed 310
Helix 10
AB1
A
360 363Right-handed 310
Helix 11
AB2
A
364 372Right-handed alpha
Helix 12
AB3
A
376 408Right-handed alpha
Helix 13
AB4
A
420 426Right-handed alpha
Helix 14
AB5
A
450 487Right-handed alpha
Helix 15
AB6
A
505 539Right-handed alpha
Helix 16
AB7
A
543 573Right-handed alpha
Helix 17
AB8
A
601 639Right-handed alpha
Helix 18
AB9
A
648 655Right-handed alpha
Helix 19
AC1
A
664 681Right-handed alpha
Helix 20
AC2
A
687 709Right-handed alpha
Helix 21
AC3
A
724 746Right-handed alpha
Helix 22
AC4
A
749 760Right-handed alpha
Helix 23
AC5
A
775 781Right-handed alpha
Helix 24
AC6
A
796 802Right-handed alpha
Helix 25
AC7
A
825 857Right-handed alpha
Helix 26
AC8
A
861 870Right-handed alpha
Helix 27
AC9
B
92 109Right-handed alpha
Helix 28
AD1
B
131 143Right-handed alpha
Helix 29
AD2
B
205 219Right-handed alpha
Helix 30
AD3
B
234 239Right-handed alpha
Helix 31
AD4
B
265 272Right-handed alpha
Helix 32
AD5
B
275 279Right-handed 310
Helix 33
AD6
B
284 292Right-handed alpha
Helix 34
AD7
B
293 327Right-handed alpha
Helix 35
AD8
B
331 339Right-handed alpha
Helix 36
AD9
B
361 375Right-handed alpha
Helix 37
AE1
B
376 409Right-handed alpha
Helix 38
AE2
B
452 475Right-handed alpha
Helix 39
AE3
B
510 537Right-handed alpha
Helix 40
AE4
B
538 540Right-handed 310
Helix 41
AE5
B
543 573Right-handed alpha
Helix 42
AE6
B
600 638Right-handed alpha
Helix 43
AE7
B
651 656Right-handed alpha
Helix 44
AE8
B
662 681Right-handed alpha
Helix 45
AE9
B
687 709Right-handed alpha
Helix 46
AF1
B
724 747Right-handed alpha
Helix 47
AF2
B
749 761Right-handed alpha
Helix 48
AF3
B
775 781Right-handed alpha
Helix 49
AF4
B
825 857Right-handed alpha
Helix 50
AF5
B
861 869Right-handed alpha
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There are 4 sheets in PDB entry 8BC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
242 247anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 785first strand
Strand 2
A
806 808anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
359 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il