Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BCC entry

There is 1 chain in PDB entry 8BCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 403	SER 1647

There are102 helices in PDB entry 8BCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	410	415	Right-handed 310
Helix 2	AA2	B	418	422	Right-handed 310
Helix 3	AA3	B	463	467	Right-handed 310
Helix 4	AA4	B	468	473	Right-handed alpha
Helix 5	AA5	B	474	476	Right-handed 310
Helix 6	AA6	B	482	494	Right-handed alpha
Helix 7	AA7	B	508	523	Right-handed alpha
Helix 8	AA8	B	544	560	Right-handed alpha
Helix 9	AA9	B	561	563	Right-handed 310
Helix 10	AB1	B	579	583	Right-handed 310
Helix 11	AB2	B	589	599	Right-handed alpha
Helix 12	AB3	B	605	607	Right-handed 310
Helix 13	AB4	B	616	622	Right-handed 310
Helix 14	AB5	B	624	641	Right-handed alpha
Helix 15	AB6	B	657	665	Right-handed alpha
Helix 16	AB7	B	668	672	Right-handed alpha
Helix 17	AB8	B	677	681	Right-handed 310
Helix 18	AB9	B	696	714	Right-handed alpha
Helix 19	AC1	B	727	745	Right-handed alpha
Helix 20	AC2	B	747	751	Right-handed 310
Helix 21	AC3	B	757	768	Right-handed alpha
Helix 22	AC4	B	771	778	Right-handed alpha
Helix 23	AC5	B	790	803	Right-handed alpha
Helix 24	AC6	B	812	819	Right-handed alpha
Helix 25	AC7	B	845	855	Right-handed alpha
Helix 26	AC8	B	875	883	Right-handed alpha
Helix 27	AC9	B	892	895	Right-handed 310
Helix 28	AD1	B	896	907	Right-handed alpha
Helix 29	AD2	B	912	921	Right-handed alpha
Helix 30	AD3	B	923	932	Right-handed alpha
Helix 31	AD4	B	933	937	Right-handed 310
Helix 32	AD5	B	939	946	Right-handed alpha
Helix 33	AD6	B	949	967	Right-handed alpha
Helix 34	AD7	B	982	991	Right-handed alpha
Helix 35	AD8	B	994	1005	Right-handed alpha
Helix 36	AD9	B	1010	1020	Right-handed alpha
Helix 37	AE1	B	1021	1025	Right-handed 310
Helix 38	AE2	B	1030	1032	Right-handed 310
Helix 39	AE3	B	1033	1042	Right-handed alpha
Helix 40	AE4	B	1054	1068	Right-handed alpha
Helix 41	AE5	B	1074	1103	Right-handed alpha
Helix 42	AE6	B	1104	1121	Right-handed alpha
Helix 43	AE7	B	1127	1132	Right-handed 310
Helix 44	AE8	B	1136	1146	Right-handed alpha
Helix 45	AE9	B	1149	1155	Right-handed 310
Helix 46	AF1	B	1157	1165	Right-handed alpha
Helix 47	AF2	B	1167	1169	Right-handed 310
Helix 48	AF3	B	1170	1181	Right-handed alpha
Helix 49	AF4	B	1211	1216	Right-handed alpha
Helix 50	AF5	B	1244	1246	Right-handed 310
Helix 51	AF6	B	1308	1313	Right-handed 310
Helix 52	AF7	B	1314	1319	Right-handed alpha
Helix 53	AF8	B	1329	1342	Right-handed alpha
Helix 54	AF9	B	1355	1371	Right-handed alpha
Helix 55	AG1	B	1382	1398	Right-handed alpha
Helix 56	AG2	B	1411	1422	Right-handed alpha
Helix 57	AG3	B	1428	1438	Right-handed alpha
Helix 58	AG4	B	1439	1441	Right-handed 310
Helix 59	AG5	B	1442	1447	Right-handed alpha
Helix 60	AG6	B	1455	1461	Right-handed 310
Helix 61	AG7	B	1463	1482	Right-handed alpha
Helix 62	AG8	B	1496	1504	Right-handed alpha
Helix 63	AG9	B	1507	1509	Right-handed 310
Helix 64	AH1	B	1515	1519	Right-handed 310
Helix 65	AH2	B	1534	1554	Right-handed alpha
Helix 66	AH3	B	1565	1583	Right-handed alpha
Helix 67	AH4	B	1593	1603	Right-handed alpha
Helix 68	AH5	B	1606	1615	Right-handed alpha
Helix 69	AH6	B	1625	1638	Right-handed alpha
Helix 70	AH7	B	1649	1651	Right-handed 310
Helix 71	AH8	B	1680	1690	Right-handed alpha
Helix 72	AH9	B	1710	1719	Right-handed alpha
Helix 73	AI1	B	1727	1731	Right-handed 310
Helix 74	AI2	B	1732	1742	Right-handed alpha
Helix 75	AI3	B	1747	1756	Right-handed alpha
Helix 76	AI4	B	1758	1767	Right-handed alpha
Helix 77	AI5	B	1768	1772	Right-handed 310
Helix 78	AI6	B	1777	1799	Right-handed alpha
Helix 79	AI7	B	1813	1823	Right-handed alpha
Helix 80	AI8	B	1825	1836	Right-handed alpha
Helix 81	AI9	B	1841	1851	Right-handed alpha
Helix 82	AJ1	B	1852	1856	Right-handed 310
Helix 83	AJ2	B	1862	1872	Right-handed alpha
Helix 84	AJ3	B	1886	1900	Right-handed alpha
Helix 85	AJ4	B	1906	1933	Right-handed alpha
Helix 86	AJ5	B	1935	1952	Right-handed alpha
Helix 87	AJ6	B	1958	1963	Right-handed 310
Helix 88	AJ7	B	1967	1977	Right-handed alpha
Helix 89	AJ8	B	1981	1987	Right-handed alpha
Helix 90	AJ9	B	1989	1997	Right-handed alpha
Helix 91	AK1	B	2000	2014	Right-handed alpha
Helix 92	AK2	B	2025	2029	Right-handed 310
Helix 93	AK3	J	2071	2082	Right-handed alpha
Helix 94	AK4	J	2083	2088	Right-handed 310
Helix 95	AK5	J	2108	2117	Right-handed alpha
Helix 96	AK6	J	2166	2170	Right-handed 310
Helix 97	AK7	J	2189	2203	Right-handed alpha
Helix 98	AK8	J	2231	2240	Right-handed alpha
Helix 99	AK9	J	2252	2254	Right-handed 310
Helix 100	AL1	J	2284	2288	Right-handed 310
Helix 101	AL2	J	2306	2309	Right-handed 310
Helix 102	AL3	J	2310	2318	Right-handed alpha

There are 15 sheets in PDB entry 8BCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	439	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	685	692	anti-parallel
Strand 4	B	865	872	parallel
Strand 5	B	825	829	parallel
Strand 6	B	721	724	parallel
Strand 7	B	808	811	parallel
Strand 8	B	782	785	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	585	588	parallel
Strand 3	B	537	541	parallel
Strand 4	B	609	614	parallel
Strand 5	B	647	652	parallel
Strand 6	B	499	502	parallel
Strand 7	B	673	675	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	835	first strand
Strand 2	B	840	843	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	970	973	first strand
Strand 2	B	978	981	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1192	first strand
Strand 2	B	1197	1206	anti-parallel
Strand 3	B	1250	1257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1242	first strand
Strand 2	B	1218	1226	anti-parallel
Strand 3	B	1265	1272	anti-parallel
Strand 4	B	1279	1285	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1407	first strand
Strand 2	B	1424	1427	parallel
Strand 3	B	1376	1379	parallel
Strand 4	B	1450	1453	parallel
Strand 5	B	1486	1491	parallel
Strand 6	B	1346	1349	parallel
Strand 7	B	1511	1513	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1523	1530	first strand
Strand 2	B	1700	1707	parallel
Strand 3	B	1660	1664	parallel
Strand 4	B	1559	1563	parallel
Strand 5	B	1643	1647	parallel
Strand 6	B	1617	1620	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1667	1670	first strand
Strand 2	B	1675	1678	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1802	1805	first strand
Strand 2	B	1809	1812	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2017	2023	first strand
Strand 2	B	2034	2043	anti-parallel
Strand 3	B	2087	2095	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2075	2082	first strand
Strand 2	B	2064	2070	anti-parallel
Strand 3	B	2104	2110	anti-parallel
Strand 4	B	2118	2122	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2090	2092	first strand
Strand 2	J	2223	2230	parallel
Strand 3	J	2212	2217	anti-parallel
Strand 4	J	2173	2181	parallel
Strand 5	J	2125	2131	anti-parallel
Strand 6	J	2139	2146	anti-parallel
Strand 7	J	2270	2274	parallel
Strand 8	J	2296	2297	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2090	2092	first strand
Strand 2	J	2223	2230	parallel
Strand 3	J	2256	2264	anti-parallel
Strand 4	J	2103	2107	parallel
Strand 5	J	2139	2146	parallel
Strand 6	J	2270	2274	parallel
Strand 7	J	2296	2297	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2151	2152	first strand
Strand 2	J	2157	2158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCC