Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BCH entry

There is 1 chain in PDB entry 8BCH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 402	ALA 1646

There are 81 helices in PDB entry 8BCH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	410	415	Right-handed alpha
Helix 2	AA2	B	463	467	Right-handed 310
Helix 3	AA3	B	469	474	Right-handed 310
Helix 4	AA4	B	482	495	Right-handed alpha
Helix 5	AA5	B	509	524	Right-handed alpha
Helix 6	AA6	B	544	560	Right-handed alpha
Helix 7	AA7	B	561	563	Right-handed 310
Helix 8	AA8	B	589	598	Right-handed alpha
Helix 9	AA9	B	602	607	Right-handed alpha
Helix 10	AB1	B	617	622	Right-handed 310
Helix 11	AB2	B	624	642	Right-handed alpha
Helix 12	AB3	B	657	665	Right-handed alpha
Helix 13	AB4	B	677	681	Right-handed 310
Helix 14	AB5	B	696	715	Right-handed alpha
Helix 15	AB6	B	727	745	Right-handed alpha
Helix 16	AB7	B	759	767	Right-handed alpha
Helix 17	AB8	B	773	781	Right-handed alpha
Helix 18	AB9	B	790	803	Right-handed alpha
Helix 19	AC1	B	812	819	Right-handed alpha
Helix 20	AC2	B	845	854	Right-handed alpha
Helix 21	AC3	B	872	874	Right-handed 310
Helix 22	AC4	B	875	883	Right-handed alpha
Helix 23	AC5	B	892	895	Right-handed 310
Helix 24	AC6	B	896	907	Right-handed alpha
Helix 25	AC7	B	912	922	Right-handed alpha
Helix 26	AC8	B	923	931	Right-handed alpha
Helix 27	AC9	B	932	937	Right-handed 310
Helix 28	AD1	B	939	946	Right-handed alpha
Helix 29	AD2	B	949	967	Right-handed alpha
Helix 30	AD3	B	982	992	Right-handed alpha
Helix 31	AD4	B	994	1005	Right-handed alpha
Helix 32	AD5	B	1010	1020	Right-handed alpha
Helix 33	AD6	B	1021	1025	Right-handed 310
Helix 34	AD7	B	1030	1032	Right-handed 310
Helix 35	AD8	B	1033	1043	Right-handed alpha
Helix 36	AD9	B	1054	1068	Right-handed alpha
Helix 37	AE1	B	1074	1103	Right-handed alpha
Helix 38	AE2	B	1104	1121	Right-handed alpha
Helix 39	AE3	B	1127	1132	Right-handed 310
Helix 40	AE4	B	1136	1146	Right-handed alpha
Helix 41	AE5	B	1149	1154	Right-handed 310
Helix 42	AE6	B	1157	1166	Right-handed alpha
Helix 43	AE7	B	1167	1169	Right-handed 310
Helix 44	AE8	B	1170	1181	Right-handed alpha
Helix 45	AE9	B	1308	1312	Right-handed 310
Helix 46	AF1	B	1314	1323	Right-handed alpha
Helix 47	AF2	B	1329	1341	Right-handed alpha
Helix 48	AF3	B	1356	1371	Right-handed alpha
Helix 49	AF4	B	1382	1397	Right-handed alpha
Helix 50	AF5	B	1411	1422	Right-handed alpha
Helix 51	AF6	B	1428	1437	Right-handed alpha
Helix 52	AF7	B	1456	1460	Right-handed 310
Helix 53	AF8	B	1463	1482	Right-handed alpha
Helix 54	AF9	B	1496	1504	Right-handed alpha
Helix 55	AG1	B	1534	1554	Right-handed alpha
Helix 56	AG2	B	1565	1583	Right-handed alpha
Helix 57	AG3	B	1593	1602	Right-handed alpha
Helix 58	AG4	B	1606	1615	Right-handed alpha
Helix 59	AG5	B	1625	1639	Right-handed alpha
Helix 60	AG6	B	1649	1651	Right-handed 310
Helix 61	AG7	B	1680	1690	Right-handed alpha
Helix 62	AG8	B	1708	1720	Right-handed alpha
Helix 63	AG9	B	1727	1731	Right-handed 310
Helix 64	AH1	B	1732	1742	Right-handed alpha
Helix 65	AH2	B	1747	1756	Right-handed alpha
Helix 66	AH3	B	1758	1767	Right-handed alpha
Helix 67	AH4	B	1768	1772	Right-handed 310
Helix 68	AH5	B	1777	1799	Right-handed alpha
Helix 69	AH6	B	1813	1822	Right-handed alpha
Helix 70	AH7	B	1825	1836	Right-handed alpha
Helix 71	AH8	B	1841	1851	Right-handed alpha
Helix 72	AH9	B	1852	1856	Right-handed 310
Helix 73	AI1	B	1863	1873	Right-handed alpha
Helix 74	AI2	B	1886	1900	Right-handed alpha
Helix 75	AI3	B	1905	1934	Right-handed alpha
Helix 76	AI4	B	1935	1952	Right-handed alpha
Helix 77	AI5	B	1958	1963	Right-handed 310
Helix 78	AI6	B	1967	1978	Right-handed alpha
Helix 79	AI7	B	1981	1988	Right-handed alpha
Helix 80	AI8	B	1989	1998	Right-handed alpha
Helix 81	AI9	B	2000	2014	Right-handed alpha

There are 12 sheets in PDB entry 8BCH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	444	447	anti-parallel
Strand 3	B	685	690	anti-parallel
Strand 4	B	865	870	parallel
Strand 5	B	825	828	parallel
Strand 6	B	721	724	parallel
Strand 7	B	809	811	parallel
Strand 8	B	784	785	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	585	588	parallel
Strand 3	B	537	541	parallel
Strand 4	B	609	615	parallel
Strand 5	B	647	652	parallel
Strand 6	B	499	502	parallel
Strand 7	B	673	675	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	835	first strand
Strand 2	B	840	843	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	970	972	first strand
Strand 2	B	979	981	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1194	first strand
Strand 2	B	1197	1206	anti-parallel
Strand 3	B	1250	1257	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1242	first strand
Strand 2	B	1218	1226	anti-parallel
Strand 3	B	1265	1272	anti-parallel
Strand 4	B	1279	1285	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1407	first strand
Strand 2	B	1424	1427	parallel
Strand 3	B	1376	1379	parallel
Strand 4	B	1450	1454	parallel
Strand 5	B	1486	1491	parallel
Strand 6	B	1346	1349	parallel
Strand 7	B	1511	1513	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1523	1530	first strand
Strand 2	B	1700	1707	parallel
Strand 3	B	1660	1663	parallel
Strand 4	B	1559	1563	parallel
Strand 5	B	1643	1647	parallel
Strand 6	B	1617	1620	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1667	1670	first strand
Strand 2	B	1675	1678	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1802	1804	first strand
Strand 2	B	1810	1812	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2017	2024	first strand
Strand 2	B	2035	2043	anti-parallel
Strand 3	B	2090	2094	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2075	2082	first strand
Strand 2	B	2064	2070	anti-parallel
Strand 3	B	2103	2110	anti-parallel
Strand 4	B	2118	2123	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BCH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCH