Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BCV entry

There are 16 chains in PDB entry 8BCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	GLY 750
B	GLU 2	GLY 734
C	SER 2	TYR 81
D	GLY 64	VAL 206
E	PRO 77	VAL 143
H	TYR 48	ILE 141
I	LEU 4	VAL 36
L	VAL 55	LYS 213
F	ASP 21	TYR 178
G	LEU 46	PRO 139
J	SER 10	PHE 52
K	ASP 42	ILE 129
1	SER 42	ARG 237
2	ALA 43	ALA 249
3	ARG 48	HIS 269
4	ALA 46	SER 244

There are149 helices in PDB entry 8BCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	43	52	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	62	95	Right-handed alpha
Helix 5	AA5	A	97	102	Right-handed alpha
Helix 6	AA6	A	120	125	Right-handed 310
Helix 7	AA7	A	140	148	Right-handed alpha
Helix 8	AA8	A	152	180	Right-handed alpha
Helix 9	AA9	A	184	189	Right-handed alpha
Helix 10	AB1	A	190	201	Right-handed alpha
Helix 11	AB2	A	202	217	Right-handed alpha
Helix 12	AB3	A	217	227	Right-handed alpha
Helix 13	AB4	A	230	234	Right-handed 310
Helix 14	AB5	A	236	241	Right-handed 310
Helix 15	AB6	A	243	249	Right-handed alpha
Helix 16	AB7	A	251	257	Right-handed 310
Helix 17	AB8	A	258	264	Right-handed alpha
Helix 18	AB9	A	265	270	Right-handed 310
Helix 19	AC1	A	287	306	Right-handed alpha
Helix 20	AC2	A	318	327	Right-handed alpha
Helix 21	AC3	A	337	343	Right-handed alpha
Helix 22	AC4	A	345	371	Right-handed alpha
Helix 23	AC5	A	380	413	Right-handed alpha
Helix 24	AC6	A	421	429	Right-handed alpha
Helix 25	AC7	A	430	462	Right-handed alpha
Helix 26	AC8	A	464	468	Right-handed 310
Helix 27	AC9	A	478	490	Right-handed alpha
Helix 28	AD1	A	527	554	Right-handed alpha
Helix 29	AD2	A	563	567	Right-handed 310
Helix 30	AD3	A	585	616	Right-handed alpha
Helix 31	AD4	A	633	638	Right-handed alpha
Helix 32	AD5	A	640	648	Right-handed alpha
Helix 33	AD6	A	648	653	Right-handed alpha
Helix 34	AD7	A	653	658	Right-handed alpha
Helix 35	AD8	A	664	687	Right-handed alpha
Helix 36	AD9	A	688	706	Right-handed alpha
Helix 37	AE1	A	718	750	Right-handed alpha
Helix 38	AE2	B	9	14	Right-handed alpha
Helix 39	AE3	B	18	27	Right-handed alpha
Helix 40	AE4	B	30	34	Right-handed 310
Helix 41	AE5	B	38	72	Right-handed alpha
Helix 42	AE6	B	73	80	Right-handed alpha
Helix 43	AE7	B	97	104	Right-handed alpha
Helix 44	AE8	B	119	127	Right-handed alpha
Helix 45	AE9	B	131	156	Right-handed alpha
Helix 46	AF1	B	157	162	Right-handed 310
Helix 47	AF2	B	170	181	Right-handed alpha
Helix 48	AF3	B	183	197	Right-handed alpha
Helix 49	AF4	B	197	202	Right-handed alpha
Helix 50	AF5	B	222	228	Right-handed alpha
Helix 51	AF6	B	229	234	Right-handed 310
Helix 52	AF7	B	269	288	Right-handed alpha
Helix 53	AF8	B	300	308	Right-handed alpha
Helix 54	AF9	B	321	328	Right-handed alpha
Helix 55	AG1	B	329	355	Right-handed alpha
Helix 56	AG2	B	364	397	Right-handed alpha
Helix 57	AG3	B	400	404	Right-handed 310
Helix 58	AG4	B	406	414	Right-handed alpha
Helix 59	AG5	B	414	446	Right-handed alpha
Helix 60	AG6	B	448	452	Right-handed 310
Helix 61	AG7	B	457	467	Right-handed alpha
Helix 62	AG8	B	476	480	Right-handed 310
Helix 63	AG9	B	483	489	Right-handed alpha
Helix 64	AH1	B	493	502	Right-handed alpha
Helix 65	AH2	B	513	540	Right-handed alpha
Helix 66	AH3	B	549	554	Right-handed 310
Helix 67	AH4	B	571	603	Right-handed alpha
Helix 68	AH5	B	605	613	Right-handed alpha
Helix 69	AH6	B	615	623	Right-handed alpha
Helix 70	AH7	B	625	629	Right-handed 310
Helix 71	AH8	B	630	633	Right-handed 310
Helix 72	AH9	B	643	666	Right-handed alpha
Helix 73	AI1	B	667	684	Right-handed alpha
Helix 74	AI2	B	701	734	Right-handed alpha
Helix 75	AI3	C	15	21	Right-handed alpha
Helix 76	AI4	C	44	48	Right-handed 310
Helix 77	AI5	C	52	58	Right-handed alpha
Helix 78	AI6	D	88	93	Right-handed alpha
Helix 79	AI7	D	129	143	Right-handed alpha
Helix 80	AI8	D	186	190	Right-handed 310
Helix 81	AI9	D	192	197	Right-handed 310
Helix 82	AJ1	E	135	137	Right-handed 310
Helix 83	AJ2	H	59	65	Right-handed alpha
Helix 84	AJ3	H	79	87	Right-handed alpha
Helix 85	AJ4	H	91	94	Right-handed 310
Helix 86	AJ5	H	95	118	Right-handed alpha
Helix 87	AJ6	H	123	128	Right-handed alpha
Helix 88	AJ7	H	136	140	Right-handed 310
Helix 89	AJ8	I	5	16	Right-handed alpha
Helix 90	AJ9	I	16	31	Right-handed alpha
Helix 91	AK1	L	60	62	Right-handed 310
Helix 92	AK2	L	70	75	Right-handed alpha
Helix 93	AK3	L	75	84	Right-handed alpha
Helix 94	AK4	L	85	89	Right-handed 310
Helix 95	AK5	L	93	109	Right-handed alpha
Helix 96	AK6	L	109	117	Right-handed alpha
Helix 97	AK7	L	124	152	Right-handed alpha
Helix 98	AK8	L	177	205	Right-handed alpha
Helix 99	AK9	F	21	25	Right-handed 310
Helix 100	AL1	F	31	50	Right-handed alpha
Helix 101	AL2	F	56	79	Right-handed alpha
Helix 102	AL3	F	103	129	Right-handed alpha
Helix 103	AL4	F	135	140	Right-handed alpha
Helix 104	AL5	F	142	150	Right-handed alpha
Helix 105	AL6	F	151	154	Right-handed 310
Helix 106	AL7	F	155	166	Right-handed alpha
Helix 107	AL8	F	172	176	Right-handed 310
Helix 108	AL9	G	47	66	Right-handed alpha
Helix 109	AM1	G	67	76	Right-handed alpha
Helix 110	AM2	G	87	91	Right-handed alpha
Helix 111	AM3	G	92	96	Right-handed 310
Helix 112	AM4	G	111	132	Right-handed alpha
Helix 113	AM5	J	11	18	Right-handed alpha
Helix 114	AM6	J	20	43	Right-handed alpha
Helix 115	AM7	K	46	65	Right-handed alpha
Helix 116	AM8	K	97	123	Right-handed alpha
Helix 117	AM9	1	73	104	Right-handed alpha
Helix 118	AN1	1	110	118	Right-handed 310
Helix 119	AN2	1	134	154	Right-handed alpha
Helix 120	AN3	1	158	164	Right-handed alpha
Helix 121	AN4	1	166	170	Right-handed 310
Helix 122	AN5	1	177	209	Right-handed alpha
Helix 123	AN6	1	213	224	Right-handed alpha
Helix 124	AN7	1	230	235	Right-handed alpha
Helix 125	AN8	2	79	103	Right-handed alpha
Helix 126	AN9	2	105	114	Right-handed alpha
Helix 127	AO1	2	123	127	Right-handed 310
Helix 128	AO2	2	132	157	Right-handed alpha
Helix 129	AO3	2	196	226	Right-handed alpha
Helix 130	AO4	2	229	240	Right-handed alpha
Helix 131	AO5	2	245	249	Right-handed 310
Helix 132	AO6	3	56	61	Right-handed alpha
Helix 133	AO7	3	87	109	Right-handed alpha
Helix 134	AO8	3	110	118	Right-handed alpha
Helix 135	AO9	3	128	132	Right-handed 310
Helix 136	AP1	3	135	139	Right-handed 310
Helix 137	AP2	3	148	171	Right-handed alpha
Helix 138	AP3	3	173	177	Right-handed 310
Helix 139	AP4	3	197	202	Right-handed alpha
Helix 140	AP5	3	211	243	Right-handed alpha
Helix 141	AP6	3	245	256	Right-handed alpha
Helix 142	AP7	3	261	265	Right-handed 310
Helix 143	AP8	4	78	113	Right-handed alpha
Helix 144	AP9	4	122	126	Right-handed 310
Helix 145	AQ1	4	131	156	Right-handed alpha
Helix 146	AQ2	4	180	184	Right-handed 310
Helix 147	AQ3	4	191	217	Right-handed alpha
Helix 148	AQ4	4	222	233	Right-handed alpha
Helix 149	AQ5	4	238	243	Right-handed alpha

There are 15 sheets in PDB entry 8BCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	126	129	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	182	183	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	127	first strand
Strand 2	D	95	102	anti-parallel
Strand 3	D	148	153	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	115	118	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	117	120	anti-parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	87	90	anti-parallel
Strand 5	E	139	141	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	68	69	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	27	first strand
Strand 2	F	82	83	anti-parallel
Strand 3	F	89	90	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	82	first strand
Strand 2	G	85	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	124	125	first strand
Strand 2	1	128	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCV