Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BCX entry

There are 3 chains in PDB entry 8BCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 39	PHE 488
B	ILE 38	PHE 488
C	LYS 34	ASP 449

There are108 helices in PDB entry 8BCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	52	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	84	90	Right-handed alpha
Helix 4	AA4	A	91	98	Right-handed alpha
Helix 5	AA5	A	117	128	Right-handed alpha
Helix 6	AA6	A	131	135	Right-handed 310
Helix 7	AA7	A	140	149	Right-handed alpha
Helix 8	AA8	A	149	155	Right-handed alpha
Helix 9	AA9	A	156	162	Right-handed alpha
Helix 10	AB1	A	163	164	Right-handed 310
Helix 11	AB2	A	165	169	Right-handed 310
Helix 12	AB3	A	174	178	Right-handed 310
Helix 13	AB4	A	193	201	Right-handed alpha
Helix 14	AB5	A	204	208	Right-handed 310
Helix 15	AB6	A	209	217	Right-handed alpha
Helix 16	AB7	A	251	262	Right-handed alpha
Helix 17	AB8	A	263	266	Right-handed 310
Helix 18	AB9	A	283	290	Right-handed alpha
Helix 19	AC1	A	292	297	Right-handed alpha
Helix 20	AC2	A	300	306	Right-handed alpha
Helix 21	AC3	A	329	334	Right-handed alpha
Helix 22	AC4	A	339	381	Right-handed alpha
Helix 23	AC5	A	386	409	Right-handed alpha
Helix 24	AC6	A	417	446	Right-handed alpha
Helix 25	AC7	A	457	462	Right-handed 310
Helix 26	AC8	A	463	468	Right-handed alpha
Helix 27	AC9	B	44	52	Right-handed alpha
Helix 28	AD1	B	52	61	Right-handed alpha
Helix 29	AD2	B	84	90	Right-handed alpha
Helix 30	AD3	B	91	98	Right-handed alpha
Helix 31	AD4	B	117	128	Right-handed alpha
Helix 32	AD5	B	131	135	Right-handed 310
Helix 33	AD6	B	140	149	Right-handed alpha
Helix 34	AD7	B	150	155	Right-handed alpha
Helix 35	AD8	B	156	162	Right-handed alpha
Helix 36	AD9	B	163	164	Right-handed 310
Helix 37	AE1	B	165	169	Right-handed 310
Helix 38	AE2	B	174	178	Right-handed 310
Helix 39	AE3	B	193	201	Right-handed alpha
Helix 40	AE4	B	204	208	Right-handed 310
Helix 41	AE5	B	209	217	Right-handed alpha
Helix 42	AE6	B	218	221	Right-handed 310
Helix 43	AE7	B	251	262	Right-handed alpha
Helix 44	AE8	B	263	266	Right-handed 310
Helix 45	AE9	B	283	290	Right-handed alpha
Helix 46	AF1	B	292	297	Right-handed alpha
Helix 47	AF2	B	300	306	Right-handed alpha
Helix 48	AF3	B	324	328	Right-handed 310
Helix 49	AF4	B	329	334	Right-handed alpha
Helix 50	AF5	B	339	381	Right-handed alpha
Helix 51	AF6	B	386	409	Right-handed alpha
Helix 52	AF7	B	417	446	Right-handed alpha
Helix 53	AF8	B	457	462	Right-handed 310
Helix 54	AF9	B	463	468	Right-handed alpha
Helix 55	AG1	C	44	52	Right-handed alpha
Helix 56	AG2	C	52	61	Right-handed alpha
Helix 57	AG3	C	84	90	Right-handed alpha
Helix 58	AG4	C	91	98	Right-handed alpha
Helix 59	AG5	C	117	128	Right-handed alpha
Helix 60	AG6	C	131	135	Right-handed 310
Helix 61	AG7	C	140	149	Right-handed alpha
Helix 62	AG8	C	150	155	Right-handed alpha
Helix 63	AG9	C	156	162	Right-handed alpha
Helix 64	AH1	C	163	164	Right-handed 310
Helix 65	AH2	C	165	169	Right-handed 310
Helix 66	AH3	C	174	178	Right-handed 310
Helix 67	AH4	C	193	201	Right-handed alpha
Helix 68	AH5	C	204	208	Right-handed 310
Helix 69	AH6	C	209	217	Right-handed alpha
Helix 70	AH7	C	218	221	Right-handed 310
Helix 71	AH8	C	251	262	Right-handed alpha
Helix 72	AH9	C	263	266	Right-handed 310
Helix 73	AI1	C	283	290	Right-handed alpha
Helix 74	AI2	C	292	297	Right-handed alpha
Helix 75	AI3	C	300	306	Right-handed alpha
Helix 76	AI4	C	329	334	Right-handed alpha
Helix 77	AI5	C	339	381	Right-handed alpha
Helix 78	AI6	C	386	409	Right-handed alpha
Helix 79	AI7	C	417	446	Right-handed alpha
Helix 80	AI8	C	457	462	Right-handed 310
Helix 81	AI9	C	463	468	Right-handed alpha
Helix 82	AJ1	D	44	49	Right-handed alpha
Helix 83	AJ2	D	52	61	Right-handed alpha
Helix 84	AJ3	D	84	90	Right-handed alpha
Helix 85	AJ4	D	91	98	Right-handed alpha
Helix 86	AJ5	D	117	128	Right-handed alpha
Helix 87	AJ6	D	131	135	Right-handed 310
Helix 88	AJ7	D	140	149	Right-handed alpha
Helix 89	AJ8	D	150	155	Right-handed alpha
Helix 90	AJ9	D	156	162	Right-handed alpha
Helix 91	AK1	D	163	164	Right-handed 310
Helix 92	AK2	D	165	169	Right-handed 310
Helix 93	AK3	D	174	178	Right-handed 310
Helix 94	AK4	D	193	201	Right-handed alpha
Helix 95	AK5	D	204	208	Right-handed 310
Helix 96	AK6	D	209	217	Right-handed alpha
Helix 97	AK7	D	218	221	Right-handed 310
Helix 98	AK8	D	251	262	Right-handed alpha
Helix 99	AK9	D	263	266	Right-handed 310
Helix 100	AL1	D	283	289	Right-handed alpha
Helix 101	AL2	D	292	297	Right-handed alpha
Helix 102	AL3	D	300	306	Right-handed alpha
Helix 103	AL4	D	331	335	Right-handed 310
Helix 104	AL5	D	339	381	Right-handed alpha
Helix 105	AL6	D	386	409	Right-handed alpha
Helix 106	AL7	D	417	446	Right-handed alpha
Helix 107	AL8	D	457	462	Right-handed 310
Helix 108	AL9	D	463	470	Right-handed alpha

There are 14 sheets in PDB entry 8BCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	102	103	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	276	277	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	485	487	parallel
Strand 3	A	477	479	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	102	103	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	276	277	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	485	487	parallel
Strand 3	B	477	479	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	102	103	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	276	277	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	311	first strand
Strand 2	C	314	317	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	455	first strand
Strand 2	C	485	487	parallel
Strand 3	C	477	479	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	102	103	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	276	277	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	311	first strand
Strand 2	D	314	317	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	485	487	parallel
Strand 3	D	477	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BCX