Analysis of interatomic Contacts of Structural Units in PDB entry:
8BD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BD1 entry

There are 2 chains in PDB entry 8BD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1254LEU 1380
B
 ILE 2PHE 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8BD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1263 1267Right-handed 310
Helix 2
AA2
A
1304 1317Right-handed alpha
Helix 3
AA3
A
1342 1346Right-handed alpha
Helix 4
AA4
A
1347 1350Right-handed 310
Helix 5
AA5
A
1356 1367Right-handed alpha
Helix 6
AA6
B
3 12Right-handed alpha
Helix 7
AA7
B
13 16Right-handed 310
Helix 8
AA8
B
18 23Right-handed alpha
Helix 9
AA9
B
33 40Right-handed alpha
Helix 10
AB1
B
52 54Right-handed 310
Helix 11
AB2
B
55 68Right-handed alpha
Helix 12
AB3
B
113 119Right-handed alpha
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There are 4 sheets in PDB entry 8BD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1255 1256first strand
Strand 2
A
1259 1260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1270 1273first strand
Strand 2
A
1276 1280anti-parallel
Strand 3
A
1286 1287anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1295 1297first strand
Strand 2
A
1336 1341anti-parallel
Strand 3
A
1326 1330anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 112first strand
Strand 2
B
95 100anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
72 78anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
26 29anti-parallel
Strand 7
B
121 122anti-parallel
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