Analysis of interatomic Contacts of Structural Units in PDB entry:
8BD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BD5 entry

There are 13 chains in PDB entry 8BD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	THR 636
B	U 5	C 250
C	C -32	A 8
D	T -8	G 32
E	ASP 17	LYS 276
F	ASP 17	LYS 276
G	ASP 17	LYS 276
H	ASP 17	LYS 276
I	ASP 17	LYS 276
J	ASP 17	LYS 276
K	ASP 17	LYS 276
Q	VAL 7	VAL 167
X	LEU 3	LEU 87

There are128 helices in PDB entry 8BD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	27	41	Right-handed alpha
Helix 3	AA3	A	44	51	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	63	68	Right-handed alpha
Helix 6	AA6	A	76	95	Right-handed alpha
Helix 7	AA7	A	98	115	Right-handed alpha
Helix 8	AA8	A	117	126	Right-handed alpha
Helix 9	AA9	A	128	142	Right-handed alpha
Helix 10	AB1	A	175	185	Right-handed alpha
Helix 11	AB2	A	187	201	Right-handed alpha
Helix 12	AB3	A	210	233	Right-handed alpha
Helix 13	AB4	A	244	257	Right-handed alpha
Helix 14	AB5	A	261	273	Right-handed alpha
Helix 15	AB6	A	287	289	Right-handed 310
Helix 16	AB7	A	318	338	Right-handed alpha
Helix 17	AB8	A	364	369	Right-handed alpha
Helix 18	AB9	A	380	382	Right-handed 310
Helix 19	AC1	A	383	408	Right-handed alpha
Helix 20	AC2	A	412	430	Right-handed alpha
Helix 21	AC3	A	476	481	Right-handed alpha
Helix 22	AC4	A	484	507	Right-handed alpha
Helix 23	AC5	A	516	538	Right-handed alpha
Helix 24	AC6	A	550	567	Right-handed alpha
Helix 25	AC7	A	570	577	Right-handed alpha
Helix 26	AC8	A	578	587	Right-handed alpha
Helix 27	AC9	A	589	605	Right-handed alpha
Helix 28	AD1	A	618	635	Right-handed alpha
Helix 29	AD2	E	18	30	Right-handed alpha
Helix 30	AD3	E	36	53	Right-handed alpha
Helix 31	AD4	E	65	77	Right-handed alpha
Helix 32	AD5	E	101	113	Right-handed alpha
Helix 33	AD6	E	121	137	Right-handed alpha
Helix 34	AD7	E	146	149	Right-handed 310
Helix 35	AD8	E	150	165	Right-handed alpha
Helix 36	AD9	E	173	183	Right-handed alpha
Helix 37	AE1	E	183	190	Right-handed alpha
Helix 38	AE2	E	202	215	Right-handed alpha
Helix 39	AE3	E	226	235	Right-handed alpha
Helix 40	AE4	E	240	259	Right-handed alpha
Helix 41	AE5	E	264	276	Right-handed alpha
Helix 42	AE6	F	18	30	Right-handed alpha
Helix 43	AE7	F	36	53	Right-handed alpha
Helix 44	AE8	F	67	77	Right-handed alpha
Helix 45	AE9	F	101	113	Right-handed alpha
Helix 46	AF1	F	121	136	Right-handed alpha
Helix 47	AF2	F	150	165	Right-handed alpha
Helix 48	AF3	F	173	181	Right-handed alpha
Helix 49	AF4	F	183	190	Right-handed alpha
Helix 50	AF5	F	202	214	Right-handed alpha
Helix 51	AF6	F	226	238	Right-handed alpha
Helix 52	AF7	F	240	258	Right-handed alpha
Helix 53	AF8	F	264	276	Right-handed alpha
Helix 54	AF9	G	18	30	Right-handed alpha
Helix 55	AG1	G	36	53	Right-handed alpha
Helix 56	AG2	G	65	77	Right-handed alpha
Helix 57	AG3	G	101	113	Right-handed alpha
Helix 58	AG4	G	121	137	Right-handed alpha
Helix 59	AG5	G	146	149	Right-handed 310
Helix 60	AG6	G	150	165	Right-handed alpha
Helix 61	AG7	G	173	183	Right-handed alpha
Helix 62	AG8	G	184	190	Right-handed alpha
Helix 63	AG9	G	201	214	Right-handed alpha
Helix 64	AH1	G	226	237	Right-handed alpha
Helix 65	AH2	G	240	258	Right-handed alpha
Helix 66	AH3	G	264	276	Right-handed alpha
Helix 67	AH4	H	18	30	Right-handed alpha
Helix 68	AH5	H	36	52	Right-handed alpha
Helix 69	AH6	H	65	77	Right-handed alpha
Helix 70	AH7	H	101	113	Right-handed alpha
Helix 71	AH8	H	121	136	Right-handed alpha
Helix 72	AH9	H	152	165	Right-handed alpha
Helix 73	AI1	H	173	182	Right-handed alpha
Helix 74	AI2	H	185	190	Right-handed alpha
Helix 75	AI3	H	201	215	Right-handed alpha
Helix 76	AI4	H	226	238	Right-handed alpha
Helix 77	AI5	H	240	258	Right-handed alpha
Helix 78	AI6	H	264	274	Right-handed alpha
Helix 79	AI7	I	18	30	Right-handed alpha
Helix 80	AI8	I	36	52	Right-handed alpha
Helix 81	AI9	I	65	77	Right-handed alpha
Helix 82	AJ1	I	101	113	Right-handed alpha
Helix 83	AJ2	I	121	136	Right-handed alpha
Helix 84	AJ3	I	150	165	Right-handed alpha
Helix 85	AJ4	I	173	183	Right-handed alpha
Helix 86	AJ5	I	184	190	Right-handed alpha
Helix 87	AJ6	I	201	214	Right-handed alpha
Helix 88	AJ7	I	226	238	Right-handed alpha
Helix 89	AJ8	I	240	259	Right-handed alpha
Helix 90	AJ9	I	264	274	Right-handed alpha
Helix 91	AK1	J	18	30	Right-handed alpha
Helix 92	AK2	J	36	53	Right-handed alpha
Helix 93	AK3	J	65	77	Right-handed alpha
Helix 94	AK4	J	101	113	Right-handed alpha
Helix 95	AK5	J	121	137	Right-handed alpha
Helix 96	AK6	J	150	165	Right-handed alpha
Helix 97	AK7	J	174	183	Right-handed alpha
Helix 98	AK8	J	184	190	Right-handed alpha
Helix 99	AK9	J	201	215	Right-handed alpha
Helix 100	AL1	J	226	237	Right-handed alpha
Helix 101	AL2	J	240	258	Right-handed alpha
Helix 102	AL3	J	264	274	Right-handed alpha
Helix 103	AL4	K	18	30	Right-handed alpha
Helix 104	AL5	K	36	51	Right-handed alpha
Helix 105	AL6	K	65	77	Right-handed alpha
Helix 106	AL7	K	101	113	Right-handed alpha
Helix 107	AL8	K	121	137	Right-handed alpha
Helix 108	AL9	K	150	152	Right-handed 310
Helix 109	AM1	K	153	164	Right-handed alpha
Helix 110	AM2	K	173	182	Right-handed alpha
Helix 111	AM3	K	184	190	Right-handed alpha
Helix 112	AM4	K	201	214	Right-handed alpha
Helix 113	AM5	K	226	238	Right-handed alpha
Helix 114	AM6	K	240	258	Right-handed alpha
Helix 115	AM7	K	264	276	Right-handed alpha
Helix 116	AM8	Q	21	34	Right-handed alpha
Helix 117	AM9	Q	36	45	Right-handed alpha
Helix 118	AN1	Q	48	54	Right-handed alpha
Helix 119	AN2	Q	63	75	Right-handed alpha
Helix 120	AN3	Q	77	83	Right-handed alpha
Helix 121	AN4	Q	100	107	Right-handed alpha
Helix 122	AN5	Q	111	116	Right-handed 310
Helix 123	AN6	Q	142	146	Right-handed 310
Helix 124	AN7	Q	159	164	Right-handed 310
Helix 125	AN8	X	4	15	Right-handed alpha
Helix 126	AN9	X	24	46	Right-handed alpha
Helix 127	AO1	X	49	74	Right-handed alpha
Helix 128	AO2	X	74	86	Right-handed alpha

There are 13 sheets in PDB entry 8BD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	301	305	anti-parallel
Strand 3	A	308	316	anti-parallel
Strand 4	A	3	11	anti-parallel
Strand 5	A	371	378	anti-parallel
Strand 6	A	349	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	460	465	anti-parallel
Strand 3	A	471	475	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	546	first strand
Strand 2	A	607	611	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	194	195	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	140	144	parallel
Strand 3	E	167	171	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	167	172	parallel
Strand 3	F	140	143	parallel
Strand 4	F	91	94	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	195	196	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	140	144	parallel
Strand 3	G	167	171	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	91	94	first strand
Strand 2	H	140	143	parallel
Strand 3	H	167	170	parallel
Strand 4	H	56	59	parallel
Strand 5	H	193	195	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	140	143	parallel
Strand 3	I	167	172	parallel
Strand 4	I	56	59	parallel
Strand 5	I	192	193	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	192	195	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	94	first strand
Strand 2	J	140	143	parallel
Strand 3	J	167	170	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	140	143	parallel
Strand 3	K	167	170	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BD5