Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BDC entry

There are 4 chains in PDB entry 8BDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 41	LYS 1104
B	LEU 41	LYS 1104
C	LEU 41	LYS 1104
D	LEU 41	LYS 1104

There are188 helices in PDB entry 8BDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	49	Right-handed alpha
Helix 2	AA2	A	125	135	Right-handed alpha
Helix 3	AA3	A	158	176	Right-handed alpha
Helix 4	AA4	A	187	203	Right-handed alpha
Helix 5	AA5	A	218	220	Right-handed 310
Helix 6	AA6	A	274	288	Right-handed alpha
Helix 7	AA7	A	309	322	Right-handed alpha
Helix 8	AA8	A	333	345	Right-handed alpha
Helix 9	AA9	A	350	362	Right-handed alpha
Helix 10	AB1	A	362	369	Right-handed alpha
Helix 11	AB2	A	370	387	Right-handed alpha
Helix 12	AB3	A	402	418	Right-handed alpha
Helix 13	AB4	A	419	424	Right-handed 310
Helix 14	AB5	A	425	436	Right-handed alpha
Helix 15	AB6	A	438	445	Right-handed alpha
Helix 16	AB7	A	454	457	Right-handed 310
Helix 17	AB8	A	458	468	Right-handed alpha
Helix 18	AB9	A	470	480	Right-handed alpha
Helix 19	AC1	A	483	488	Right-handed alpha
Helix 20	AC2	A	489	499	Right-handed alpha
Helix 21	AC3	A	502	516	Right-handed alpha
Helix 22	AC4	A	518	533	Right-handed alpha
Helix 23	AC5	A	559	571	Right-handed alpha
Helix 24	AC6	A	573	582	Right-handed alpha
Helix 25	AC7	A	586	602	Right-handed alpha
Helix 26	AC8	A	607	636	Right-handed alpha
Helix 27	AC9	A	637	645	Right-handed alpha
Helix 28	AD1	A	648	652	Right-handed 310
Helix 29	AD2	A	655	663	Right-handed alpha
Helix 30	AD3	A	665	670	Right-handed alpha
Helix 31	AD4	A	671	684	Right-handed alpha
Helix 32	AD5	A	691	701	Right-handed alpha
Helix 33	AD6	A	702	708	Right-handed 310
Helix 34	AD7	A	724	732	Right-handed alpha
Helix 35	AD8	A	733	759	Right-handed alpha
Helix 36	AD9	A	765	790	Right-handed alpha
Helix 37	AE1	A	791	794	Right-handed 310
Helix 38	AE2	A	798	818	Right-handed alpha
Helix 39	AE3	A	821	852	Right-handed alpha
Helix 40	AE4	A	856	889	Right-handed alpha
Helix 41	AE5	A	896	912	Right-handed alpha
Helix 42	AE6	A	955	980	Right-handed alpha
Helix 43	AE7	A	981	983	Right-handed 310
Helix 44	AE8	A	991	1007	Right-handed alpha
Helix 45	AE9	A	1015	1030	Right-handed alpha
Helix 46	AF1	A	1050	1072	Right-handed alpha
Helix 47	AF2	A	1078	1104	Right-handed alpha
Helix 48	AF3	B	42	49	Right-handed alpha
Helix 49	AF4	B	125	135	Right-handed alpha
Helix 50	AF5	B	158	176	Right-handed alpha
Helix 51	AF6	B	187	203	Right-handed alpha
Helix 52	AF7	B	218	220	Right-handed 310
Helix 53	AF8	B	274	288	Right-handed alpha
Helix 54	AF9	B	309	322	Right-handed alpha
Helix 55	AG1	B	333	345	Right-handed alpha
Helix 56	AG2	B	350	362	Right-handed alpha
Helix 57	AG3	B	362	369	Right-handed alpha
Helix 58	AG4	B	370	387	Right-handed alpha
Helix 59	AG5	B	402	418	Right-handed alpha
Helix 60	AG6	B	419	424	Right-handed 310
Helix 61	AG7	B	425	436	Right-handed alpha
Helix 62	AG8	B	438	445	Right-handed alpha
Helix 63	AG9	B	454	457	Right-handed 310
Helix 64	AH1	B	458	468	Right-handed alpha
Helix 65	AH2	B	470	480	Right-handed alpha
Helix 66	AH3	B	483	488	Right-handed alpha
Helix 67	AH4	B	489	499	Right-handed alpha
Helix 68	AH5	B	502	516	Right-handed alpha
Helix 69	AH6	B	518	533	Right-handed alpha
Helix 70	AH7	B	559	571	Right-handed alpha
Helix 71	AH8	B	573	582	Right-handed alpha
Helix 72	AH9	B	586	602	Right-handed alpha
Helix 73	AI1	B	607	636	Right-handed alpha
Helix 74	AI2	B	637	645	Right-handed alpha
Helix 75	AI3	B	648	652	Right-handed 310
Helix 76	AI4	B	655	663	Right-handed alpha
Helix 77	AI5	B	665	670	Right-handed alpha
Helix 78	AI6	B	671	684	Right-handed alpha
Helix 79	AI7	B	691	701	Right-handed alpha
Helix 80	AI8	B	702	708	Right-handed 310
Helix 81	AI9	B	724	732	Right-handed alpha
Helix 82	AJ1	B	733	759	Right-handed alpha
Helix 83	AJ2	B	765	790	Right-handed alpha
Helix 84	AJ3	B	791	794	Right-handed 310
Helix 85	AJ4	B	798	818	Right-handed alpha
Helix 86	AJ5	B	821	852	Right-handed alpha
Helix 87	AJ6	B	856	889	Right-handed alpha
Helix 88	AJ7	B	896	912	Right-handed alpha
Helix 89	AJ8	B	955	980	Right-handed alpha
Helix 90	AJ9	B	981	983	Right-handed 310
Helix 91	AK1	B	991	1007	Right-handed alpha
Helix 92	AK2	B	1015	1030	Right-handed alpha
Helix 93	AK3	B	1050	1072	Right-handed alpha
Helix 94	AK4	B	1078	1104	Right-handed alpha
Helix 95	AK5	C	42	49	Right-handed alpha
Helix 96	AK6	C	125	135	Right-handed alpha
Helix 97	AK7	C	158	176	Right-handed alpha
Helix 98	AK8	C	187	203	Right-handed alpha
Helix 99	AK9	C	218	220	Right-handed 310
Helix 100	AL1	C	274	288	Right-handed alpha
Helix 101	AL2	C	309	322	Right-handed alpha
Helix 102	AL3	C	333	345	Right-handed alpha
Helix 103	AL4	C	350	362	Right-handed alpha
Helix 104	AL5	C	362	369	Right-handed alpha
Helix 105	AL6	C	370	387	Right-handed alpha
Helix 106	AL7	C	402	418	Right-handed alpha
Helix 107	AL8	C	419	424	Right-handed 310
Helix 108	AL9	C	425	436	Right-handed alpha
Helix 109	AM1	C	438	445	Right-handed alpha
Helix 110	AM2	C	454	457	Right-handed 310
Helix 111	AM3	C	458	468	Right-handed alpha
Helix 112	AM4	C	470	480	Right-handed alpha
Helix 113	AM5	C	483	488	Right-handed alpha
Helix 114	AM6	C	489	499	Right-handed alpha
Helix 115	AM7	C	502	516	Right-handed alpha
Helix 116	AM8	C	518	533	Right-handed alpha
Helix 117	AM9	C	559	571	Right-handed alpha
Helix 118	AN1	C	573	582	Right-handed alpha
Helix 119	AN2	C	586	602	Right-handed alpha
Helix 120	AN3	C	607	636	Right-handed alpha
Helix 121	AN4	C	637	645	Right-handed alpha
Helix 122	AN5	C	648	652	Right-handed 310
Helix 123	AN6	C	655	663	Right-handed alpha
Helix 124	AN7	C	665	670	Right-handed alpha
Helix 125	AN8	C	671	684	Right-handed alpha
Helix 126	AN9	C	691	701	Right-handed alpha
Helix 127	AO1	C	702	708	Right-handed 310
Helix 128	AO2	C	724	732	Right-handed alpha
Helix 129	AO3	C	733	759	Right-handed alpha
Helix 130	AO4	C	765	790	Right-handed alpha
Helix 131	AO5	C	791	794	Right-handed 310
Helix 132	AO6	C	798	818	Right-handed alpha
Helix 133	AO7	C	821	852	Right-handed alpha
Helix 134	AO8	C	856	889	Right-handed alpha
Helix 135	AO9	C	896	912	Right-handed alpha
Helix 136	AP1	C	955	980	Right-handed alpha
Helix 137	AP2	C	981	983	Right-handed 310
Helix 138	AP3	C	991	1007	Right-handed alpha
Helix 139	AP4	C	1015	1030	Right-handed alpha
Helix 140	AP5	C	1050	1072	Right-handed alpha
Helix 141	AP6	C	1078	1104	Right-handed alpha
Helix 142	AP7	D	42	49	Right-handed alpha
Helix 143	AP8	D	125	135	Right-handed alpha
Helix 144	AP9	D	158	176	Right-handed alpha
Helix 145	AQ1	D	187	203	Right-handed alpha
Helix 146	AQ2	D	218	220	Right-handed 310
Helix 147	AQ3	D	274	288	Right-handed alpha
Helix 148	AQ4	D	309	322	Right-handed alpha
Helix 149	AQ5	D	333	345	Right-handed alpha
Helix 150	AQ6	D	350	362	Right-handed alpha
Helix 151	AQ7	D	362	369	Right-handed alpha
Helix 152	AQ8	D	370	387	Right-handed alpha
Helix 153	AQ9	D	402	418	Right-handed alpha
Helix 154	AR1	D	419	424	Right-handed 310
Helix 155	AR2	D	425	436	Right-handed alpha
Helix 156	AR3	D	438	445	Right-handed alpha
Helix 157	AR4	D	454	457	Right-handed 310
Helix 158	AR5	D	458	468	Right-handed alpha
Helix 159	AR6	D	470	480	Right-handed alpha
Helix 160	AR7	D	483	488	Right-handed alpha
Helix 161	AR8	D	489	499	Right-handed alpha
Helix 162	AR9	D	502	516	Right-handed alpha
Helix 163	AS1	D	518	533	Right-handed alpha
Helix 164	AS2	D	559	571	Right-handed alpha
Helix 165	AS3	D	573	582	Right-handed alpha
Helix 166	AS4	D	586	602	Right-handed alpha
Helix 167	AS5	D	607	636	Right-handed alpha
Helix 168	AS6	D	637	645	Right-handed alpha
Helix 169	AS7	D	648	652	Right-handed 310
Helix 170	AS8	D	655	663	Right-handed alpha
Helix 171	AS9	D	665	670	Right-handed alpha
Helix 172	AT1	D	671	684	Right-handed alpha
Helix 173	AT2	D	691	701	Right-handed alpha
Helix 174	AT3	D	702	708	Right-handed 310
Helix 175	AT4	D	724	732	Right-handed alpha
Helix 176	AT5	D	733	759	Right-handed alpha
Helix 177	AT6	D	765	790	Right-handed alpha
Helix 178	AT7	D	791	794	Right-handed 310
Helix 179	AT8	D	798	818	Right-handed alpha
Helix 180	AT9	D	821	852	Right-handed alpha
Helix 181	AU1	D	856	889	Right-handed alpha
Helix 182	AU2	D	896	912	Right-handed alpha
Helix 183	AU3	D	955	980	Right-handed alpha
Helix 184	AU4	D	981	983	Right-handed 310
Helix 185	AU5	D	991	1007	Right-handed alpha
Helix 186	AU6	D	1015	1030	Right-handed alpha
Helix 187	AU7	D	1050	1072	Right-handed alpha
Helix 188	AU8	D	1078	1104	Right-handed alpha

There are 12 sheets in PDB entry 8BDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	95	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	82	83	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	103	107	parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	259	264	parallel
Strand 5	A	210	216	parallel
Strand 6	A	178	181	parallel
Strand 7	A	145	150	parallel
Strand 8	A	301	306	parallel
Strand 9	A	326	329	parallel
Strand 10	A	391	394	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	54	first strand
Strand 2	B	95	99	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	82	83	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	103	107	parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	259	264	parallel
Strand 5	B	210	216	parallel
Strand 6	B	178	181	parallel
Strand 7	B	145	150	parallel
Strand 8	B	301	306	parallel
Strand 9	B	326	329	parallel
Strand 10	B	391	394	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	95	99	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	82	83	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	103	107	parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	259	264	parallel
Strand 5	C	210	216	parallel
Strand 6	C	178	181	parallel
Strand 7	C	145	150	parallel
Strand 8	C	301	306	parallel
Strand 9	C	326	329	parallel
Strand 10	C	391	394	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	95	99	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	82	83	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	103	107	parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	259	264	parallel
Strand 5	D	210	216	parallel
Strand 6	D	178	181	parallel
Strand 7	D	145	150	parallel
Strand 8	D	301	306	parallel
Strand 9	D	326	329	parallel
Strand 10	D	391	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDC