Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BDD entry

There are 2 chains in PDB entry 8BDD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	LYS 738
B	GLN 24	GLU 572

There are 51 helices in PDB entry 8BDD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	45	64	Right-handed alpha
Helix 3	AA3	A	78	102	Right-handed alpha
Helix 4	AA4	A	103	121	Right-handed alpha
Helix 5	AA5	A	122	124	Right-handed 310
Helix 6	AA6	A	141	160	Right-handed alpha
Helix 7	AA7	A	161	163	Right-handed 310
Helix 8	AA8	A	164	175	Right-handed alpha
Helix 9	AA9	A	175	186	Right-handed alpha
Helix 10	AB1	A	191	198	Right-handed alpha
Helix 11	AB2	A	201	219	Right-handed alpha
Helix 12	AB3	A	220	230	Right-handed alpha
Helix 13	AB4	A	239	247	Right-handed alpha
Helix 14	AB5	A	257	279	Right-handed alpha
Helix 15	AB6	A	280	285	Right-handed 310
Helix 16	AB7	A	286	302	Right-handed alpha
Helix 17	AB8	A	321	335	Right-handed alpha
Helix 18	AB9	A	339	349	Right-handed alpha
Helix 19	AC1	A	355	367	Right-handed alpha
Helix 20	AC2	A	413	417	Right-handed 310
Helix 21	AC3	A	448	452	Right-handed 310
Helix 22	AC4	A	454	460	Right-handed alpha
Helix 23	AC5	A	463	467	Right-handed 310
Helix 24	AC6	A	476	480	Right-handed 310
Helix 25	AC7	A	481	486	Right-handed alpha
Helix 26	AC8	A	581	583	Right-handed 310
Helix 27	AC9	B	31	41	Right-handed alpha
Helix 28	AD1	B	45	64	Right-handed alpha
Helix 29	AD2	B	78	102	Right-handed alpha
Helix 30	AD3	B	103	121	Right-handed alpha
Helix 31	AD4	B	122	124	Right-handed 310
Helix 32	AD5	B	141	160	Right-handed alpha
Helix 33	AD6	B	161	163	Right-handed 310
Helix 34	AD7	B	164	175	Right-handed alpha
Helix 35	AD8	B	175	186	Right-handed alpha
Helix 36	AD9	B	191	198	Right-handed alpha
Helix 37	AE1	B	201	219	Right-handed alpha
Helix 38	AE2	B	220	230	Right-handed alpha
Helix 39	AE3	B	239	247	Right-handed alpha
Helix 40	AE4	B	257	279	Right-handed alpha
Helix 41	AE5	B	280	285	Right-handed 310
Helix 42	AE6	B	286	302	Right-handed alpha
Helix 43	AE7	B	321	335	Right-handed alpha
Helix 44	AE8	B	339	349	Right-handed alpha
Helix 45	AE9	B	355	367	Right-handed alpha
Helix 46	AF1	B	448	452	Right-handed 310
Helix 47	AF2	B	454	460	Right-handed alpha
Helix 48	AF3	B	463	467	Right-handed 310
Helix 49	AF4	B	476	480	Right-handed 310
Helix 50	AF5	B	481	486	Right-handed alpha
Helix 51	AF6	B	581	583	Right-handed 310

There are 15 sheets in PDB entry 8BDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	307	308	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	381	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	403	409	anti-parallel
Strand 4	A	423	428	anti-parallel
Strand 5	A	431	434	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	547	555	anti-parallel
Strand 3	A	640	649	anti-parallel
Strand 4	A	621	627	anti-parallel
Strand 5	A	585	591	anti-parallel
Strand 6	A	566	568	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	547	555	anti-parallel
Strand 3	A	640	649	anti-parallel
Strand 4	A	621	627	anti-parallel
Strand 5	A	585	591	anti-parallel
Strand 6	A	572	575	anti-parallel
Strand 7	B	572	574	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	496	first strand
Strand 2	A	502	509	anti-parallel
Strand 3	A	517	525	anti-parallel
Strand 4	A	534	542	anti-parallel
Strand 5	A	652	661	anti-parallel
Strand 6	A	608	615	anti-parallel
Strand 7	A	598	605	anti-parallel
Strand 8	A	558	562	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	665	first strand
Strand 2	A	670	672	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	686	first strand
Strand 2	A	690	697	anti-parallel
Strand 3	A	701	708	anti-parallel
Strand 4	A	733	738	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	722	first strand
Strand 2	A	725	730	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	307	308	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	381	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	403	409	anti-parallel
Strand 4	B	423	428	anti-parallel
Strand 5	B	431	434	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	534	555	anti-parallel
Strand 3	B	640	661	anti-parallel
Strand 4	B	608	615	anti-parallel
Strand 5	B	598	605	anti-parallel
Strand 6	B	558	562	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	496	first strand
Strand 2	B	502	509	anti-parallel
Strand 3	B	516	525	anti-parallel
Strand 4	B	534	555	anti-parallel
Strand 5	B	640	661	anti-parallel
Strand 6	B	621	627	anti-parallel
Strand 7	B	585	591	anti-parallel
Strand 8	B	566	568	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	665	first strand
Strand 2	B	670	672	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	686	first strand
Strand 2	B	690	697	anti-parallel
Strand 3	B	701	708	anti-parallel
Strand 4	B	733	738	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	722	first strand
Strand 2	B	725	730	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BDD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDD