Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BDP entry

There is 1 chain in PDB entry 8BDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23MET 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8BDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 74Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
116 130Right-handed alpha
Helix 4
AA4
A
132 138Right-handed alpha
Helix 5
AA5
A
175 189Right-handed alpha
Helix 6
AA6
A
212 217Right-handed alpha
Helix 7
AA7
A
243 256Right-handed alpha
Helix 8
AA8
A
271 278Right-handed alpha
Helix 9
AA9
A
278 283Right-handed alpha
Helix 10
AB1
A
307 325Right-handed alpha
Helix 11
AB2
A
339 344Right-handed alpha
Helix 12
AB3
A
345 355Right-handed alpha
Helix 13
AB4
A
360 377Right-handed alpha
Helix 14
AB5
A
378 383Right-handed 310
Helix 15
AB6
A
391 395Right-handed 310
Helix 16
AB7
A
397 401Right-handed 310
Helix 17
AB8
A
411 422Right-handed alpha
Helix 18
AB9
A
430 435Right-handed alpha
Helix 19
AC1
A
456 463Right-handed alpha
Helix 20
AC2
A
473 475Right-handed 310
Helix 21
AC3
A
491 500Right-handed alpha
Helix 22
AC4
A
501 512Right-handed alpha
Helix 23
AC5
A
513 517Right-handed 310
Helix 24
AC6
A
518 528Right-handed alpha
Helix 25
AC7
A
529 537Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8BDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 41first strand
Strand 2
A
148 156anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
88 92parallel
Strand 6
A
45 50parallel
Strand 7
A
76 79parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 168first strand
Strand 2
A
193 197parallel
Strand 3
A
260 264parallel
Strand 4
A
329 333parallel
Strand 5
A
385 389parallel
Strand 6
A
404 408parallel
Strand 7
A
425 428parallel
Strand 8
A
477 484parallel
Strand 9
A
162 168parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
238 239anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il