Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BDR entry

There are 7 chains in PDB entry 8BDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 722
B	GLY 0	ILE 749
C	MET 1	LYS 740
V	A 1	G 12
R	G 8	U 19
M	A 2	C 16
M	U 18	C 19

There are 96 helices in PDB entry 8BDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	84	99	Right-handed alpha
Helix 5	AA5	A	127	139	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	186	192	Right-handed alpha
Helix 8	AA8	A	205	214	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	237	246	Right-handed alpha
Helix 11	AB2	A	258	262	Right-handed 310
Helix 12	AB3	A	266	271	Right-handed 310
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	313	319	Right-handed alpha
Helix 15	AB6	A	332	349	Right-handed alpha
Helix 16	AB7	A	359	366	Right-handed alpha
Helix 17	AB8	A	376	383	Right-handed alpha
Helix 18	AB9	A	400	411	Right-handed alpha
Helix 19	AC1	A	429	448	Right-handed alpha
Helix 20	AC2	A	449	472	Right-handed alpha
Helix 21	AC3	A	563	572	Right-handed alpha
Helix 22	AC4	A	574	596	Right-handed alpha
Helix 23	AC5	A	599	606	Right-handed alpha
Helix 24	AC6	A	629	646	Right-handed alpha
Helix 25	AC7	A	648	670	Right-handed alpha
Helix 26	AC8	A	678	688	Right-handed alpha
Helix 27	AC9	A	693	715	Right-handed alpha
Helix 28	AD1	A	716	719	Right-handed 310
Helix 29	AD2	B	7	12	Right-handed alpha
Helix 30	AD3	B	14	22	Right-handed 310
Helix 31	AD4	B	35	49	Right-handed alpha
Helix 32	AD5	B	84	99	Right-handed alpha
Helix 33	AD6	B	101	116	Right-handed alpha
Helix 34	AD7	B	118	125	Right-handed 310
Helix 35	AD8	B	138	153	Right-handed alpha
Helix 36	AD9	B	156	161	Right-handed 310
Helix 37	AE1	B	162	174	Right-handed alpha
Helix 38	AE2	B	214	222	Right-handed alpha
Helix 39	AE3	B	245	265	Right-handed alpha
Helix 40	AE4	B	275	292	Right-handed alpha
Helix 41	AE5	B	308	313	Right-handed alpha
Helix 42	AE6	B	314	326	Right-handed alpha
Helix 43	AE7	B	330	346	Right-handed alpha
Helix 44	AE8	B	369	376	Right-handed 310
Helix 45	AE9	B	377	381	Right-handed 310
Helix 46	AF1	B	382	393	Right-handed alpha
Helix 47	AF2	B	394	396	Right-handed 310
Helix 48	AF3	B	413	426	Right-handed alpha
Helix 49	AF4	B	454	472	Right-handed alpha
Helix 50	AF5	B	504	512	Right-handed 310
Helix 51	AF6	B	517	536	Right-handed alpha
Helix 52	AF7	B	539	559	Right-handed alpha
Helix 53	AF8	B	569	582	Right-handed alpha
Helix 54	AF9	B	584	588	Right-handed 310
Helix 55	AG1	B	589	593	Right-handed 310
Helix 56	AG2	B	599	603	Right-handed 310
Helix 57	AG3	B	606	611	Right-handed alpha
Helix 58	AG4	B	616	624	Right-handed alpha
Helix 59	AG5	B	680	699	Right-handed alpha
Helix 60	AG6	B	712	731	Right-handed alpha
Helix 61	AG7	B	735	749	Right-handed alpha
Helix 62	AG8	C	2	15	Right-handed alpha
Helix 63	AG9	C	15	25	Right-handed alpha
Helix 64	AH1	C	26	35	Right-handed alpha
Helix 65	AH2	C	44	53	Right-handed alpha
Helix 66	AH3	C	64	69	Right-handed alpha
Helix 67	AH4	C	94	105	Right-handed alpha
Helix 68	AH5	C	110	117	Right-handed alpha
Helix 69	AH6	C	117	129	Right-handed alpha
Helix 70	AH7	C	157	170	Right-handed alpha
Helix 71	AH8	C	178	183	Right-handed 310
Helix 72	AH9	C	184	195	Right-handed alpha
Helix 73	AI1	C	201	214	Right-handed alpha
Helix 74	AI2	C	227	232	Right-handed alpha
Helix 75	AI3	C	233	238	Right-handed alpha
Helix 76	AI4	C	253	274	Right-handed alpha
Helix 77	AI5	C	277	288	Right-handed alpha
Helix 78	AI6	C	296	303	Right-handed alpha
Helix 79	AI7	C	307	318	Right-handed alpha
Helix 80	AI8	C	392	407	Right-handed alpha
Helix 81	AI9	C	409	415	Right-handed alpha
Helix 82	AJ1	C	431	442	Right-handed alpha
Helix 83	AJ2	C	443	452	Right-handed alpha
Helix 84	AJ3	C	515	519	Right-handed 310
Helix 85	AJ4	C	536	541	Right-handed 310
Helix 86	AJ5	C	542	557	Right-handed alpha
Helix 87	AJ6	C	557	568	Right-handed alpha
Helix 88	AJ7	C	570	574	Right-handed 310
Helix 89	AJ8	C	575	583	Right-handed alpha
Helix 90	AJ9	C	586	607	Right-handed alpha
Helix 91	AK1	C	611	619	Right-handed alpha
Helix 92	AK2	C	620	623	Right-handed 310
Helix 93	AK3	C	682	688	Right-handed 310
Helix 94	AK4	C	689	694	Right-handed 310
Helix 95	AK5	C	705	709	Right-handed 310
Helix 96	AK6	C	713	719	Right-handed alpha

There are 24 sheets in PDB entry 8BDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	145	149	parallel
Strand 5	A	154	155	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	476	487	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	537	545	anti-parallel
Strand 3	A	550	562	anti-parallel
Strand 4	A	514	522	anti-parallel
Strand 5	A	492	502	anti-parallel
Strand 6	A	476	487	anti-parallel
Strand 7	A	416	417	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	191	first strand
Strand 2	B	200	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	92	93	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	530	532	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	331	336	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	479	482	parallel
Strand 7	C	462	463	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	347	first strand
Strand 2	C	353	359	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	673	676	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	702	first strand
Strand 2	C	734	739	anti-parallel
Strand 3	C	725	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDR