Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BDX entry

There are 8 chains in PDB entry 8BDX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 351	ASP 459
B	MET 1	LYS 104
C	MET 16	CYS 112
D	PRO 61	GLN 209
E	SER 351	ASP 459
F	MET 1	LYS 104
G	MET 17	CYS 112
H	PRO 61	GLN 209

There are 36 helices in PDB entry 8BDX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	352	366	Right-handed alpha
Helix 2	AA2	A	369	374	Right-handed alpha
Helix 3	AA3	A	375	377	Right-handed 310
Helix 4	AA4	A	381	386	Right-handed alpha
Helix 5	AA5	A	389	394	Right-handed alpha
Helix 6	AA6	A	400	409	Right-handed alpha
Helix 7	AA7	A	414	433	Right-handed alpha
Helix 8	AA8	A	437	456	Right-handed alpha
Helix 9	AA9	B	23	36	Right-handed alpha
Helix 10	AB1	B	38	40	Right-handed 310
Helix 11	AB2	C	33	37	Right-handed alpha
Helix 12	AB3	C	39	48	Right-handed alpha
Helix 13	AB4	C	66	84	Right-handed alpha
Helix 14	AB5	C	96	111	Right-handed alpha
Helix 15	AB6	D	157	168	Right-handed alpha
Helix 16	AB7	D	171	175	Right-handed 310
Helix 17	AB8	D	181	190	Right-handed alpha
Helix 18	AB9	D	193	207	Right-handed alpha
Helix 19	AC1	E	352	366	Right-handed alpha
Helix 20	AC2	E	369	374	Right-handed alpha
Helix 21	AC3	E	375	377	Right-handed 310
Helix 22	AC4	E	381	386	Right-handed alpha
Helix 23	AC5	E	389	394	Right-handed alpha
Helix 24	AC6	E	399	409	Right-handed alpha
Helix 25	AC7	E	414	433	Right-handed alpha
Helix 26	AC8	E	437	457	Right-handed alpha
Helix 27	AC9	F	23	36	Right-handed alpha
Helix 28	AD1	F	38	40	Right-handed 310
Helix 29	AD2	G	33	37	Right-handed alpha
Helix 30	AD3	G	39	47	Right-handed alpha
Helix 31	AD4	G	66	84	Right-handed alpha
Helix 32	AD5	G	96	111	Right-handed alpha
Helix 33	AD6	H	157	168	Right-handed alpha
Helix 34	AD7	H	171	175	Right-handed 310
Helix 35	AD8	H	181	190	Right-handed alpha
Helix 36	AD9	H	193	207	Right-handed alpha

There are 8 sheets in PDB entry 8BDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	84	85	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	2	9	parallel
Strand 5	B	12	19	anti-parallel
Strand 6	C	28	32	parallel
Strand 7	C	18	22	anti-parallel
Strand 8	C	59	61	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	112	first strand
Strand 2	D	71	78	anti-parallel
Strand 3	D	147	152	parallel
Strand 4	D	129	130	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	84	89	anti-parallel
Strand 3	D	116	121	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	42	46	anti-parallel
Strand 3	F	73	81	anti-parallel
Strand 4	F	84	85	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	42	46	anti-parallel
Strand 3	F	73	81	anti-parallel
Strand 4	F	2	9	parallel
Strand 5	F	12	19	anti-parallel
Strand 6	G	28	32	parallel
Strand 7	G	18	22	anti-parallel
Strand 8	G	59	61	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	112	first strand
Strand 2	H	71	79	anti-parallel
Strand 3	H	147	152	parallel
Strand 4	H	129	130	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	97	first strand
Strand 2	H	84	89	anti-parallel
Strand 3	H	116	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BDX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BDX