Analysis of interatomic Contacts of Structural Units in PDB entry:
8BE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BE2 entry

There are 2 chains in PDB entry 8BE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	MET 567	SER 1043
N	GLN 1	SER 116

There are 27 helices in PDB entry 8BE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	575	579	Right-handed 310
Helix 2	AA2	S	605	614	Right-handed alpha
Helix 3	AA3	S	620	631	Right-handed alpha
Helix 4	AA4	S	632	634	Right-handed 310
Helix 5	AA5	S	636	649	Right-handed alpha
Helix 6	AA6	S	672	681	Right-handed alpha
Helix 7	AA7	S	681	700	Right-handed alpha
Helix 8	AA8	S	701	707	Right-handed alpha
Helix 9	AA9	S	707	720	Right-handed alpha
Helix 10	AB1	S	723	743	Right-handed alpha
Helix 11	AB2	S	770	774	Right-handed 310
Helix 12	AB3	S	780	798	Right-handed alpha
Helix 13	AB4	S	800	811	Right-handed 310
Helix 14	AB5	S	813	818	Right-handed alpha
Helix 15	AB6	S	818	841	Right-handed alpha
Helix 16	AB7	S	844	865	Right-handed alpha
Helix 17	AB8	S	867	880	Right-handed alpha
Helix 18	AB9	S	880	885	Right-handed alpha
Helix 19	AC1	S	886	891	Right-handed alpha
Helix 20	AC2	S	894	922	Right-handed alpha
Helix 21	AC3	S	930	943	Right-handed alpha
Helix 22	AC4	S	958	973	Right-handed alpha
Helix 23	AC5	S	984	993	Right-handed alpha
Helix 24	AC6	S	1001	1017	Right-handed alpha
Helix 25	AC7	N	27	31	Right-handed 310
Helix 26	AC8	N	61	64	Right-handed 310
Helix 27	AC9	N	86	90	Right-handed 310

There are 4 sheets in PDB entry 8BE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	586	588	first strand
Strand 2	S	601	604	anti-parallel
Strand 3	S	953	957	anti-parallel
Strand 4	S	947	950	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	18	24	anti-parallel
Strand 3	N	77	82	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	111	115	parallel
Strand 3	N	91	99	anti-parallel
Strand 4	N	33	39	anti-parallel
Strand 5	N	46	52	anti-parallel
Strand 6	N	57	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	111	115	parallel
Strand 3	N	91	99	anti-parallel
Strand 4	N	104	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BE2