Analysis of interatomic Contacts of Structural Units in PDB entry:
8BE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BE7 entry

There are 4 chains in PDB entry 8BE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	MET 1	HIS 166
S	MET 567	ASN 1044
P	LYS 1	LYS 1
P	HIS 3	ALA 8

There are 31 helices in PDB entry 8BE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	17	25	Right-handed alpha
Helix 2	AA2	R	64	66	Right-handed 310
Helix 3	AA3	R	67	74	Right-handed alpha
Helix 4	AA4	R	87	92	Right-handed alpha
Helix 5	AA5	R	92	105	Right-handed alpha
Helix 6	AA6	R	126	137	Right-handed alpha
Helix 7	AA7	R	151	165	Right-handed alpha
Helix 8	AA8	S	575	579	Right-handed 310
Helix 9	AA9	S	605	614	Right-handed alpha
Helix 10	AB1	S	620	630	Right-handed alpha
Helix 11	AB2	S	636	649	Right-handed alpha
Helix 12	AB3	S	674	681	Right-handed alpha
Helix 13	AB4	S	681	700	Right-handed alpha
Helix 14	AB5	S	701	707	Right-handed alpha
Helix 15	AB6	S	707	719	Right-handed alpha
Helix 16	AB7	S	723	741	Right-handed alpha
Helix 17	AB8	S	780	798	Right-handed alpha
Helix 18	AB9	S	800	805	Right-handed alpha
Helix 19	AC1	S	807	811	Right-handed 310
Helix 20	AC2	S	813	818	Right-handed alpha
Helix 21	AC3	S	818	841	Right-handed alpha
Helix 22	AC4	S	844	865	Right-handed alpha
Helix 23	AC5	S	867	880	Right-handed alpha
Helix 24	AC6	S	880	885	Right-handed alpha
Helix 25	AC7	S	886	892	Right-handed alpha
Helix 26	AC8	S	894	909	Right-handed alpha
Helix 27	AC9	S	912	922	Right-handed alpha
Helix 28	AD1	S	930	943	Right-handed alpha
Helix 29	AD2	S	958	974	Right-handed alpha
Helix 30	AD3	S	984	993	Right-handed alpha
Helix 31	AD4	S	1001	1017	Right-handed alpha

There are 2 sheets in PDB entry 8BE7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	43	46	first strand
Strand 2	R	49	57	anti-parallel
Strand 3	R	2	10	parallel
Strand 4	R	77	83	parallel
Strand 5	R	111	116	parallel
Strand 6	R	141	144	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	586	588	first strand
Strand 2	S	601	604	anti-parallel
Strand 3	S	953	957	anti-parallel
Strand 4	S	947	950	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BE7