Analysis of interatomic Contacts of Structural Units in PDB entry:
8BED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BED entry

There are 8 chains in PDB entry 8BED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 30	HIS 221
F	GLU 51	ALA 484
G	ARG 57	LEU 743
I	GLU 143	ARG 150
Q	GLU 47	GLN 151
R	VAL 37	HIS 109
S	ALA 2	ALA 94
W	GLY 119	PHE 133

There are 80 helices in PDB entry 8BED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	50	62	Right-handed alpha
Helix 2	AA2	E	68	71	Right-handed 310
Helix 3	AA3	E	72	84	Right-handed alpha
Helix 4	AA4	E	89	101	Right-handed alpha
Helix 5	AA5	E	103	114	Right-handed alpha
Helix 6	AA6	E	132	137	Right-handed alpha
Helix 7	AA7	E	143	152	Right-handed alpha
Helix 8	AA8	E	202	216	Right-handed alpha
Helix 9	AA9	F	59	63	Right-handed 310
Helix 10	AB1	F	75	83	Right-handed alpha
Helix 11	AB2	F	87	95	Right-handed alpha
Helix 12	AB3	F	95	107	Right-handed alpha
Helix 13	AB4	F	117	124	Right-handed alpha
Helix 14	AB5	F	148	157	Right-handed alpha
Helix 15	AB6	F	157	172	Right-handed alpha
Helix 16	AB7	F	185	202	Right-handed alpha
Helix 17	AB8	F	208	212	Right-handed 310
Helix 18	AB9	F	226	230	Right-handed 310
Helix 19	AC1	F	231	240	Right-handed alpha
Helix 20	AC2	F	257	261	Right-handed 310
Helix 21	AC3	F	268	273	Right-handed alpha
Helix 22	AC4	F	273	281	Right-handed alpha
Helix 23	AC5	F	281	287	Right-handed alpha
Helix 24	AC6	F	319	327	Right-handed alpha
Helix 25	AC7	F	333	335	Right-handed 310
Helix 26	AC8	F	352	356	Right-handed alpha
Helix 27	AC9	F	361	367	Right-handed alpha
Helix 28	AD1	F	385	401	Right-handed alpha
Helix 29	AD2	F	405	424	Right-handed alpha
Helix 30	AD3	F	430	443	Right-handed alpha
Helix 31	AD4	F	449	484	Right-handed alpha
Helix 32	AD5	G	59	63	Right-handed 310
Helix 33	AD6	G	69	71	Right-handed 310
Helix 34	AD7	G	90	98	Right-handed alpha
Helix 35	AD8	G	148	165	Right-handed alpha
Helix 36	AD9	G	169	173	Right-handed 310
Helix 37	AE1	G	179	188	Right-handed alpha
Helix 38	AE2	G	215	218	Right-handed 310
Helix 39	AE3	G	222	231	Right-handed alpha
Helix 40	AE4	G	242	246	Right-handed 310
Helix 41	AE5	G	262	268	Right-handed alpha
Helix 42	AE6	G	283	287	Right-handed 310
Helix 43	AE7	G	329	335	Right-handed alpha
Helix 44	AE8	G	336	341	Right-handed 310
Helix 45	AE9	G	360	373	Right-handed alpha
Helix 46	AF1	G	374	375	Right-handed 310
Helix 47	AF2	G	376	378	Right-handed 310
Helix 48	AF3	G	389	403	Right-handed alpha
Helix 49	AF4	G	421	426	Right-handed 310
Helix 50	AF5	G	431	437	Right-handed 310
Helix 51	AF6	G	446	451	Right-handed alpha
Helix 52	AF7	G	451	466	Right-handed alpha
Helix 53	AF8	G	488	498	Right-handed alpha
Helix 54	AF9	G	500	508	Right-handed alpha
Helix 55	AG1	G	519	523	Right-handed 310
Helix 56	AG2	G	525	540	Right-handed alpha
Helix 57	AG3	G	558	566	Right-handed alpha
Helix 58	AG4	G	574	578	Right-handed 310
Helix 59	AG5	G	590	594	Right-handed 310
Helix 60	AG6	G	608	614	Right-handed alpha
Helix 61	AG7	G	622	626	Right-handed 310
Helix 62	AG8	G	652	665	Right-handed alpha
Helix 63	AG9	G	672	682	Right-handed alpha
Helix 64	AH1	G	683	688	Right-handed 310
Helix 65	AH2	G	699	703	Right-handed 310
Helix 66	AH3	G	728	731	Right-handed 310
Helix 67	AH4	G	732	742	Right-handed alpha
Helix 68	AH5	Q	100	105	Right-handed alpha
Helix 69	AH6	Q	110	122	Right-handed alpha
Helix 70	AH7	Q	139	145	Right-handed 310
Helix 71	AH8	R	38	43	Right-handed alpha
Helix 72	AH9	R	52	59	Right-handed alpha
Helix 73	AI1	R	77	81	Right-handed 310
Helix 74	AI2	S	2	5	Right-handed 310
Helix 75	AI3	S	6	11	Right-handed alpha
Helix 76	AI4	S	22	24	Right-handed 310
Helix 77	AI5	S	25	43	Right-handed alpha
Helix 78	AI6	S	65	67	Right-handed 310
Helix 79	AI7	S	78	92	Right-handed alpha
Helix 80	AI8	W	121	130	Right-handed alpha

There are 18 sheets in PDB entry 8BED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	168	first strand
Strand 2	E	125	129	parallel
Strand 3	E	181	185	anti-parallel
Strand 4	E	194	198	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	222	first strand
Strand 2	F	176	181	parallel
Strand 3	F	135	140	parallel
Strand 4	F	263	267	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	309	314	first strand
Strand 2	F	296	303	anti-parallel
Strand 3	F	376	381	parallel
Strand 4	F	337	341	anti-parallel
Strand 5	F	350	351	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	317	318	first strand
Strand 2	F	359	360	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	65	first strand
Strand 2	Q	134	135	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	86	first strand
Strand 2	G	73	78	anti-parallel
Strand 3	G	143	145	parallel
Strand 4	G	121	124	anti-parallel
Strand 5	G	131	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	213	first strand
Strand 2	G	273	275	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	240	first strand
Strand 2	G	247	249	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	288	293	first strand
Strand 2	G	302	307	anti-parallel
Strand 3	G	312	317	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	356	358	first strand
Strand 2	G	348	350	anti-parallel
Strand 3	G	616	619	anti-parallel
Strand 4	G	599	604	parallel
Strand 5	G	580	584	parallel
Strand 6	G	380	384	parallel
Strand 7	G	408	410	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	483	486	first strand
Strand 2	G	468	472	parallel
Strand 3	G	439	443	parallel
Strand 4	G	512	517	parallel
Strand 5	G	550	553	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	543	544	first strand
Strand 2	G	547	548	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	629	631	first strand
Strand 2	G	637	639	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	75	77	first strand
Strand 2	Q	53	57	anti-parallel
Strand 3	Q	124	128	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	83	85	first strand
Strand 2	Q	92	94	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	63	65	first strand
Strand 2	R	103	106	parallel
Strand 3	R	95	96	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	69	72	first strand
Strand 2	R	85	88	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	48	52	first strand
Strand 2	S	13	18	parallel
Strand 3	S	59	63	anti-parallel
Strand 4	S	69	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BED

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BED