Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEE entry

There are 10 chains in PDB entry 8BEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 62	LYS 218
C	MET 1	ALA 181
D	ASN 10	ARG 394
I	LYS 58	ARG 222
P	SER 67	ARG 382
U	VAL 40	LYS 126
V	ALA 12	ALA 151
W	ILE 10	GLY 106
Z	PRO 19	SER 45
q	MET 31	SER 110

There are 71 helices in PDB entry 8BEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	64	83	Right-handed alpha
Helix 2	AA2	B	93	103	Right-handed alpha
Helix 3	AA3	B	107	112	Right-handed 310
Helix 4	AA4	B	118	122	Right-handed 310
Helix 5	AA5	B	135	145	Right-handed alpha
Helix 6	AA6	B	156	162	Right-handed alpha
Helix 7	AA7	B	163	166	Right-handed 310
Helix 8	AA8	B	174	178	Right-handed 310
Helix 9	AA9	B	191	207	Right-handed alpha
Helix 10	AB1	B	210	218	Right-handed alpha
Helix 11	AB2	C	2	14	Right-handed alpha
Helix 12	AB3	C	15	19	Right-handed 310
Helix 13	AB4	C	34	36	Right-handed 310
Helix 14	AB5	C	37	48	Right-handed alpha
Helix 15	AB6	C	107	120	Right-handed alpha
Helix 16	AB7	D	19	23	Right-handed 310
Helix 17	AB8	D	50	56	Right-handed alpha
Helix 18	AB9	D	59	69	Right-handed alpha
Helix 19	AC1	D	74	91	Right-handed alpha
Helix 20	AC2	D	95	125	Right-handed alpha
Helix 21	AC3	D	128	150	Right-handed alpha
Helix 22	AC4	D	170	194	Right-handed alpha
Helix 23	AC5	D	196	204	Right-handed alpha
Helix 24	AC6	D	210	217	Right-handed alpha
Helix 25	AC7	D	221	226	Right-handed alpha
Helix 26	AC8	D	232	237	Right-handed alpha
Helix 27	AC9	D	241	245	Right-handed 310
Helix 28	AD1	D	256	282	Right-handed alpha
Helix 29	AD2	D	298	305	Right-handed alpha
Helix 30	AD3	D	305	318	Right-handed alpha
Helix 31	AD4	D	357	365	Right-handed alpha
Helix 32	AD5	D	365	371	Right-handed alpha
Helix 33	AD6	D	376	386	Right-handed alpha
Helix 34	AD7	D	388	394	Right-handed alpha
Helix 35	AD8	I	59	73	Right-handed alpha
Helix 36	AD9	I	73	89	Right-handed alpha
Helix 37	AE1	I	127	133	Right-handed alpha
Helix 38	AE2	I	166	172	Right-handed alpha
Helix 39	AE3	I	190	192	Right-handed 310
Helix 40	AE4	I	196	219	Right-handed alpha
Helix 41	AE5	P	78	91	Right-handed alpha
Helix 42	AE6	P	106	110	Right-handed 310
Helix 43	AE7	P	127	136	Right-handed alpha
Helix 44	AE8	P	155	161	Right-handed alpha
Helix 45	AE9	P	161	175	Right-handed alpha
Helix 46	AF1	P	194	211	Right-handed alpha
Helix 47	AF2	P	229	241	Right-handed alpha
Helix 48	AF3	P	258	271	Right-handed alpha
Helix 49	AF4	P	290	302	Right-handed alpha
Helix 50	AF5	P	311	326	Right-handed alpha
Helix 51	AF6	P	340	347	Right-handed alpha
Helix 52	AF7	P	375	382	Right-handed 310
Helix 53	AF8	U	46	60	Right-handed alpha
Helix 54	AF9	U	74	80	Right-handed alpha
Helix 55	AG1	U	82	98	Right-handed alpha
Helix 56	AG2	U	102	107	Right-handed alpha
Helix 57	AG3	U	111	120	Right-handed alpha
Helix 58	AG4	V	28	44	Right-handed alpha
Helix 59	AG5	V	45	47	Right-handed 310
Helix 60	AG6	V	51	71	Right-handed alpha
Helix 61	AG7	V	73	82	Right-handed alpha
Helix 62	AG8	V	85	107	Right-handed alpha
Helix 63	AG9	V	139	151	Right-handed alpha
Helix 64	AH1	W	18	36	Right-handed alpha
Helix 65	AH2	W	36	45	Right-handed alpha
Helix 66	AH3	W	51	66	Right-handed alpha
Helix 67	AH4	W	71	92	Right-handed alpha
Helix 68	AH5	q	36	46	Right-handed alpha
Helix 69	AH6	q	85	89	Right-handed 310
Helix 70	AH7	q	90	98	Right-handed alpha
Helix 71	AH8	q	104	110	Right-handed alpha

There are 15 sheets in PDB entry 8BEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	124	128	parallel
Strand 3	B	151	155	parallel
Strand 4	B	183	185	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	63	first strand
Strand 2	C	71	79	anti-parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	30	32	parallel
Strand 5	C	21	25	anti-parallel
Strand 6	V	118	122	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	123	124	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	163	168	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	36	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	162	163	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	333	first strand
Strand 2	D	336	344	anti-parallel
Strand 3	D	352	356	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	111	113	first strand
Strand 2	I	177	179	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	141	first strand
Strand 2	I	154	158	anti-parallel
Strand 3	I	194	195	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	122	first strand
Strand 2	P	94	99	parallel
Strand 3	P	70	74	parallel
Strand 4	P	140	143	parallel
Strand 5	P	179	183	parallel
Strand 6	P	215	219	parallel
Strand 7	P	279	282	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	222	223	first strand
Strand 2	P	256	257	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	243	245	first strand
Strand 2	P	307	309	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	252	253	first strand
Strand 2	P	288	289	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	99	100	first strand
Strand 2	W	103	104	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	50	54	first strand
Strand 2	q	60	63	anti-parallel
Strand 3	q	74	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEE