Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEF entry

There are 22 chains in PDB entry 8BEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 2	GLU 119
H	TYR 2	PRO 325
J	MET 1	THR 174
K	ASP 2	GLY 100
L	ASP 590	LYS 665
M	LEU 2	PRO 270
N	MET 12	LEU 499
O	GLY 37	PRO 159
X	GLY 9	LYS 106
Y	ARG 7	ILE 131
Z	ALA 46	TRP 143
a	LEU 3	ALA 60
b	PRO 2	SER 44
d	PRO 2	PHE 76
e	ALA 2	LEU 65
f	ASN 2	ARG 101
i	GLU 17	GLU 84
u	VAL 2	ALA 56
v	LYS 75	ALA 103
x	GLN 44	GLY 253
y	MET 1	GLY 265
z	GLY 2	LYS 234

There are139 helices in PDB entry 8BEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	25	Right-handed alpha
Helix 2	AA2	A	26	28	Right-handed 310
Helix 3	AA3	A	58	113	Right-handed alpha
Helix 4	AA4	H	4	35	Right-handed alpha
Helix 5	AA5	H	44	48	Right-handed 310
Helix 6	AA6	H	49	60	Right-handed alpha
Helix 7	AA7	H	70	88	Right-handed alpha
Helix 8	AA8	H	89	92	Right-handed 310
Helix 9	AA9	H	105	117	Right-handed alpha
Helix 10	AB1	H	117	128	Right-handed alpha
Helix 11	AB2	H	130	163	Right-handed alpha
Helix 12	AB3	H	166	173	Right-handed alpha
Helix 13	AB4	H	183	198	Right-handed alpha
Helix 14	AB5	H	204	212	Right-handed 310
Helix 15	AB6	H	221	248	Right-handed alpha
Helix 16	AB7	H	257	262	Right-handed alpha
Helix 17	AB8	H	264	287	Right-handed alpha
Helix 18	AB9	H	291	302	Right-handed alpha
Helix 19	AC1	H	302	321	Right-handed alpha
Helix 20	AC2	J	2	20	Right-handed alpha
Helix 21	AC3	J	22	44	Right-handed alpha
Helix 22	AC4	J	46	57	Right-handed alpha
Helix 23	AC5	J	60	73	Right-handed alpha
Helix 24	AC6	J	75	80	Right-handed alpha
Helix 25	AC7	J	83	85	Right-handed 310
Helix 26	AC8	J	86	102	Right-handed alpha
Helix 27	AC9	J	103	109	Right-handed alpha
Helix 28	AD1	J	118	123	Right-handed 310
Helix 29	AD2	J	126	131	Right-handed 310
Helix 30	AD3	J	135	145	Right-handed alpha
Helix 31	AD4	J	148	171	Right-handed alpha
Helix 32	AD5	K	2	24	Right-handed alpha
Helix 33	AD6	K	27	53	Right-handed alpha
Helix 34	AD7	K	56	88	Right-handed alpha
Helix 35	AD8	K	91	95	Right-handed 310
Helix 36	AD9	L	592	597	Right-handed alpha
Helix 37	AE1	L	598	617	Right-handed alpha
Helix 38	AE2	L	620	640	Right-handed alpha
Helix 39	AE3	L	644	648	Right-handed 310
Helix 40	AE4	L	650	661	Right-handed alpha
Helix 41	AE5	M	11	28	Right-handed alpha
Helix 42	AE6	M	33	58	Right-handed alpha
Helix 43	AE7	M	90	108	Right-handed alpha
Helix 44	AE8	M	111	116	Right-handed alpha
Helix 45	AE9	M	116	135	Right-handed alpha
Helix 46	AF1	M	138	149	Right-handed alpha
Helix 47	AF2	M	149	161	Right-handed alpha
Helix 48	AF3	M	165	196	Right-handed alpha
Helix 49	AF4	M	199	204	Right-handed alpha
Helix 50	AF5	M	209	228	Right-handed alpha
Helix 51	AF6	M	235	244	Right-handed alpha
Helix 52	AF7	M	245	255	Right-handed alpha
Helix 53	AF8	M	257	267	Right-handed alpha
Helix 54	AF9	N	12	18	Right-handed 310
Helix 55	AG1	N	19	41	Right-handed alpha
Helix 56	AG2	N	50	72	Right-handed alpha
Helix 57	AG3	N	73	78	Right-handed 310
Helix 58	AG4	N	90	110	Right-handed alpha
Helix 59	AG5	N	111	119	Right-handed alpha
Helix 60	AG6	N	123	142	Right-handed alpha
Helix 61	AG7	N	144	164	Right-handed alpha
Helix 62	AG8	N	169	202	Right-handed alpha
Helix 63	AG9	N	205	214	Right-handed alpha
Helix 64	AH1	N	223	241	Right-handed alpha
Helix 65	AH2	N	248	257	Right-handed alpha
Helix 66	AH3	N	258	266	Right-handed alpha
Helix 67	AH4	N	267	282	Right-handed alpha
Helix 68	AH5	N	287	312	Right-handed alpha
Helix 69	AH6	N	314	337	Right-handed alpha
Helix 70	AH7	N	338	368	Right-handed alpha
Helix 71	AH8	N	373	378	Right-handed 310
Helix 72	AH9	N	379	384	Right-handed alpha
Helix 73	AI1	N	384	400	Right-handed alpha
Helix 74	AI2	N	406	418	Right-handed alpha
Helix 75	AI3	N	422	449	Right-handed alpha
Helix 76	AI4	N	462	479	Right-handed alpha
Helix 77	AI5	N	480	482	Right-handed 310
Helix 78	AI6	N	483	497	Right-handed alpha
Helix 79	AI7	O	40	43	Right-handed 310
Helix 80	AI8	O	67	75	Right-handed alpha
Helix 81	AI9	O	79	83	Right-handed 310
Helix 82	AJ1	O	87	91	Right-handed 310
Helix 83	AJ2	O	100	105	Right-handed alpha
Helix 84	AJ3	O	111	122	Right-handed alpha
Helix 85	AJ4	O	135	137	Right-handed 310
Helix 86	AJ5	O	140	144	Right-handed 310
Helix 87	AJ6	X	14	21	Right-handed alpha
Helix 88	AJ7	X	21	29	Right-handed alpha
Helix 89	AJ8	X	29	43	Right-handed alpha
Helix 90	AJ9	X	45	48	Right-handed 310
Helix 91	AK1	X	49	71	Right-handed alpha
Helix 92	AK2	X	71	85	Right-handed alpha
Helix 93	AK3	X	88	91	Right-handed 310
Helix 94	AK4	X	92	103	Right-handed alpha
Helix 95	AK5	Y	14	41	Right-handed alpha
Helix 96	AK6	Y	44	48	Right-handed 310
Helix 97	AK7	Y	51	87	Right-handed alpha
Helix 98	AK8	Y	92	112	Right-handed alpha
Helix 99	AK9	Y	113	131	Right-handed alpha
Helix 100	AL1	Z	47	85	Right-handed alpha
Helix 101	AL2	Z	85	112	Right-handed alpha
Helix 102	AL3	Z	139	143	Right-handed 310
Helix 103	AL4	a	3	4	Right-handed 310
Helix 104	AL5	a	5	35	Right-handed alpha
Helix 105	AL6	a	43	59	Right-handed alpha
Helix 106	AL7	b	5	14	Right-handed alpha
Helix 107	AL8	b	14	44	Right-handed alpha
Helix 108	AL9	d	4	24	Right-handed alpha
Helix 109	AM1	d	31	73	Right-handed alpha
Helix 110	AM2	d	74	76	Right-handed 310
Helix 111	AM3	e	14	26	Right-handed alpha
Helix 112	AM4	e	30	33	Right-handed 310
Helix 113	AM5	e	34	47	Right-handed alpha
Helix 114	AM6	e	47	64	Right-handed alpha
Helix 115	AM7	f	21	28	Right-handed alpha
Helix 116	AM8	f	30	53	Right-handed alpha
Helix 117	AM9	f	57	86	Right-handed alpha
Helix 118	AN1	f	91	99	Right-handed alpha
Helix 119	AN2	i	18	37	Right-handed alpha
Helix 120	AN3	i	38	45	Right-handed alpha
Helix 121	AN4	i	52	59	Right-handed 310
Helix 122	AN5	i	60	66	Right-handed alpha
Helix 123	AN6	i	67	70	Right-handed 310
Helix 124	AN7	i	77	84	Right-handed alpha
Helix 125	AN8	u	3	31	Right-handed alpha
Helix 126	AN9	u	31	56	Right-handed alpha
Helix 127	AO1	v	79	102	Right-handed alpha
Helix 128	AO2	x	210	233	Right-handed alpha
Helix 129	AO3	x	240	251	Right-handed alpha
Helix 130	AO4	y	2	30	Right-handed alpha
Helix 131	AO5	y	193	219	Right-handed alpha
Helix 132	AO6	y	221	235	Right-handed alpha
Helix 133	AO7	y	239	247	Right-handed alpha
Helix 134	AO8	y	253	257	Right-handed 310
Helix 135	AO9	y	259	263	Right-handed 310
Helix 136	AP1	z	3	30	Right-handed alpha
Helix 137	AP2	z	33	37	Right-handed 310
Helix 138	AP3	z	193	220	Right-handed alpha
Helix 139	AP4	z	223	232	Right-handed alpha

There are 11 sheets in PDB entry 8BEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	67	73	first strand
Strand 2	M	81	86	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	63	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	146	149	parallel
Strand 4	O	96	99	anti-parallel
Strand 5	O	131	133	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	62	63	first strand
Strand 2	x	83	90	parallel
Strand 3	x	101	111	parallel
Strand 4	x	122	124	parallel
Strand 5	x	150	152	parallel
Strand 6	x	167	168	parallel
Strand 7	x	185	186	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	71	72	first strand
Strand 2	x	83	90	parallel
Strand 3	x	101	111	parallel
Strand 4	x	137	139	parallel
Strand 5	x	155	156	parallel
Strand 6	x	173	174	parallel
Strand 7	x	191	192	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	77	78	first strand
Strand 2	x	95	96	parallel
Strand 3	x	116	117	parallel
Strand 4	x	143	145	parallel
Strand 5	x	160	162	parallel
Strand 6	x	179	180	parallel
Strand 7	x	196	199	parallel
Strand 8	x	204	208	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	45	46	first strand
Strand 2	y	66	73	parallel
Strand 3	y	84	94	parallel
Strand 4	y	105	107	parallel
Strand 5	y	133	135	parallel
Strand 6	y	150	151	parallel
Strand 7	y	168	169	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	54	55	first strand
Strand 2	y	66	73	parallel
Strand 3	y	84	94	parallel
Strand 4	y	120	122	parallel
Strand 5	y	138	139	parallel
Strand 6	y	156	157	parallel
Strand 7	y	174	175	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	60	61	first strand
Strand 2	y	78	79	parallel
Strand 3	y	99	100	parallel
Strand 4	y	127	128	parallel
Strand 5	y	144	145	parallel
Strand 6	y	162	163	parallel
Strand 7	y	179	182	parallel
Strand 8	y	187	191	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	45	46	first strand
Strand 2	z	66	73	parallel
Strand 3	z	84	94	parallel
Strand 4	z	105	107	parallel
Strand 5	z	133	135	parallel
Strand 6	z	150	151	parallel
Strand 7	z	168	169	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	54	55	first strand
Strand 2	z	66	73	parallel
Strand 3	z	84	94	parallel
Strand 4	z	120	122	parallel
Strand 5	z	138	139	parallel
Strand 6	z	156	157	parallel
Strand 7	z	174	175	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	60	61	first strand
Strand 2	z	78	79	parallel
Strand 3	z	99	100	parallel
Strand 4	z	127	128	parallel
Strand 5	z	144	145	parallel
Strand 6	z	162	163	parallel
Strand 7	z	179	182	parallel
Strand 8	z	187	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEF