Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEI entry

There are 6 chains in PDB entry 8BEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 11	ARG 379
B	LEU 11	ARG 379
C	LEU 11	ARG 379
D	LEU 11	ARG 379
E	LEU 11	ARG 379
F	LEU 11	ARG 379

There are108 helices in PDB entry 8BEI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	45	Right-handed alpha
Helix 2	AA2	A	46	57	Right-handed alpha
Helix 3	AA3	A	61	75	Right-handed alpha
Helix 4	AA4	A	79	88	Right-handed alpha
Helix 5	AA5	A	94	111	Right-handed alpha
Helix 6	AA6	A	119	144	Right-handed alpha
Helix 7	AA7	A	156	167	Right-handed alpha
Helix 8	AA8	A	171	185	Right-handed alpha
Helix 9	AA9	A	191	202	Right-handed alpha
Helix 10	AB1	A	206	220	Right-handed alpha
Helix 11	AB2	A	221	224	Right-handed 310
Helix 12	AB3	A	228	238	Right-handed alpha
Helix 13	AB4	A	269	287	Right-handed alpha
Helix 14	AB5	A	289	306	Right-handed alpha
Helix 15	AB6	A	314	326	Right-handed alpha
Helix 16	AB7	A	329	331	Right-handed 310
Helix 17	AB8	A	332	355	Right-handed alpha
Helix 18	AB9	A	375	379	Right-handed 310
Helix 19	AC1	B	38	45	Right-handed alpha
Helix 20	AC2	B	46	57	Right-handed alpha
Helix 21	AC3	B	61	75	Right-handed alpha
Helix 22	AC4	B	79	88	Right-handed alpha
Helix 23	AC5	B	94	111	Right-handed alpha
Helix 24	AC6	B	119	144	Right-handed alpha
Helix 25	AC7	B	156	167	Right-handed alpha
Helix 26	AC8	B	171	185	Right-handed alpha
Helix 27	AC9	B	191	202	Right-handed alpha
Helix 28	AD1	B	206	220	Right-handed alpha
Helix 29	AD2	B	221	224	Right-handed 310
Helix 30	AD3	B	228	238	Right-handed alpha
Helix 31	AD4	B	269	287	Right-handed alpha
Helix 32	AD5	B	289	306	Right-handed alpha
Helix 33	AD6	B	314	326	Right-handed alpha
Helix 34	AD7	B	329	331	Right-handed 310
Helix 35	AD8	B	332	355	Right-handed alpha
Helix 36	AD9	B	375	379	Right-handed 310
Helix 37	AE1	C	38	45	Right-handed alpha
Helix 38	AE2	C	46	57	Right-handed alpha
Helix 39	AE3	C	61	75	Right-handed alpha
Helix 40	AE4	C	79	88	Right-handed alpha
Helix 41	AE5	C	94	111	Right-handed alpha
Helix 42	AE6	C	119	144	Right-handed alpha
Helix 43	AE7	C	156	167	Right-handed alpha
Helix 44	AE8	C	171	185	Right-handed alpha
Helix 45	AE9	C	191	202	Right-handed alpha
Helix 46	AF1	C	206	220	Right-handed alpha
Helix 47	AF2	C	221	224	Right-handed 310
Helix 48	AF3	C	228	238	Right-handed alpha
Helix 49	AF4	C	269	287	Right-handed alpha
Helix 50	AF5	C	289	306	Right-handed alpha
Helix 51	AF6	C	314	326	Right-handed alpha
Helix 52	AF7	C	329	331	Right-handed 310
Helix 53	AF8	C	332	355	Right-handed alpha
Helix 54	AF9	C	375	379	Right-handed 310
Helix 55	AG1	D	38	45	Right-handed alpha
Helix 56	AG2	D	46	57	Right-handed alpha
Helix 57	AG3	D	61	75	Right-handed alpha
Helix 58	AG4	D	79	88	Right-handed alpha
Helix 59	AG5	D	94	111	Right-handed alpha
Helix 60	AG6	D	119	144	Right-handed alpha
Helix 61	AG7	D	156	167	Right-handed alpha
Helix 62	AG8	D	171	185	Right-handed alpha
Helix 63	AG9	D	191	202	Right-handed alpha
Helix 64	AH1	D	206	220	Right-handed alpha
Helix 65	AH2	D	221	224	Right-handed 310
Helix 66	AH3	D	228	238	Right-handed alpha
Helix 67	AH4	D	269	287	Right-handed alpha
Helix 68	AH5	D	289	306	Right-handed alpha
Helix 69	AH6	D	314	326	Right-handed alpha
Helix 70	AH7	D	329	331	Right-handed 310
Helix 71	AH8	D	332	355	Right-handed alpha
Helix 72	AH9	D	375	379	Right-handed 310
Helix 73	AI1	E	38	45	Right-handed alpha
Helix 74	AI2	E	46	57	Right-handed alpha
Helix 75	AI3	E	61	75	Right-handed alpha
Helix 76	AI4	E	79	88	Right-handed alpha
Helix 77	AI5	E	94	111	Right-handed alpha
Helix 78	AI6	E	119	144	Right-handed alpha
Helix 79	AI7	E	156	167	Right-handed alpha
Helix 80	AI8	E	171	185	Right-handed alpha
Helix 81	AI9	E	191	202	Right-handed alpha
Helix 82	AJ1	E	206	220	Right-handed alpha
Helix 83	AJ2	E	221	224	Right-handed 310
Helix 84	AJ3	E	228	238	Right-handed alpha
Helix 85	AJ4	E	269	287	Right-handed alpha
Helix 86	AJ5	E	289	306	Right-handed alpha
Helix 87	AJ6	E	314	326	Right-handed alpha
Helix 88	AJ7	E	329	331	Right-handed 310
Helix 89	AJ8	E	332	355	Right-handed alpha
Helix 90	AJ9	E	375	379	Right-handed 310
Helix 91	AK1	F	38	45	Right-handed alpha
Helix 92	AK2	F	46	57	Right-handed alpha
Helix 93	AK3	F	61	75	Right-handed alpha
Helix 94	AK4	F	79	88	Right-handed alpha
Helix 95	AK5	F	94	111	Right-handed alpha
Helix 96	AK6	F	119	144	Right-handed alpha
Helix 97	AK7	F	156	167	Right-handed alpha
Helix 98	AK8	F	171	185	Right-handed alpha
Helix 99	AK9	F	191	202	Right-handed alpha
Helix 100	AL1	F	206	220	Right-handed alpha
Helix 101	AL2	F	221	224	Right-handed 310
Helix 102	AL3	F	228	238	Right-handed alpha
Helix 103	AL4	F	269	287	Right-handed alpha
Helix 104	AL5	F	289	306	Right-handed alpha
Helix 105	AL6	F	314	326	Right-handed alpha
Helix 106	AL7	F	329	331	Right-handed 310
Helix 107	AL8	F	332	355	Right-handed alpha
Helix 108	AL9	F	375	379	Right-handed 310

There are 12 sheets in PDB entry 8BEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	B	362	365	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	30	33	anti-parallel
Strand 3	A	36	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	B	15	19	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	30	33	anti-parallel
Strand 3	B	36	37	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	E	362	365	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	30	33	anti-parallel
Strand 3	C	36	37	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	365	first strand
Strand 2	E	15	19	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	F	362	365	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	30	33	anti-parallel
Strand 3	D	36	37	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	365	first strand
Strand 2	F	15	19	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	25	first strand
Strand 2	E	30	33	anti-parallel
Strand 3	E	36	37	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	25	first strand
Strand 2	F	30	33	anti-parallel
Strand 3	F	36	37	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEI