Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BEN entry

There are 4 chains in PDB entry 8BEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 396ALA 802
B
 GLY 393ALA 802
C
 SER 395ALA 802
D
 PRO 394LYS 801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8BEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
396 409Right-handed alpha
Helix 2
AA2
A
410 417Right-handed alpha
Helix 3
AA3
A
437 443Right-handed 310
Helix 4
AA4
A
460 466Right-handed 310
Helix 5
AA5
A
482 493Right-handed alpha
Helix 6
AA6
A
502 506Right-handed 310
Helix 7
AA7
A
507 513Right-handed 310
Helix 8
AA8
A
557 562Right-handed alpha
Helix 9
AA9
A
583 588Right-handed 310
Helix 10
AB1
A
605 611Right-handed 310
Helix 11
AB2
A
627 636Right-handed 310
Helix 12
AB3
A
653 659Right-handed 310
Helix 13
AB4
A
676 682Right-handed 310
Helix 14
AB5
A
699 705Right-handed 310
Helix 15
AB6
A
722 728Right-handed 310
Helix 16
AB7
A
745 751Right-handed 310
Helix 17
AB8
A
768 774Right-handed 310
Helix 18
AB9
A
785 790Right-handed alpha
Helix 19
AC1
A
793 802Right-handed alpha
Helix 20
AC2
B
394 409Right-handed alpha
Helix 21
AC3
B
410 417Right-handed alpha
Helix 22
AC4
B
437 443Right-handed 310
Helix 23
AC5
B
461 466Right-handed 310
Helix 24
AC6
B
482 493Right-handed alpha
Helix 25
AC7
B
502 506Right-handed 310
Helix 26
AC8
B
507 513Right-handed 310
Helix 27
AC9
B
557 564Right-handed 310
Helix 28
AD1
B
583 588Right-handed 310
Helix 29
AD2
B
605 611Right-handed 310
Helix 30
AD3
B
629 636Right-handed 310
Helix 31
AD4
B
653 659Right-handed 310
Helix 32
AD5
B
676 682Right-handed 310
Helix 33
AD6
B
699 704Right-handed 310
Helix 34
AD7
B
722 728Right-handed 310
Helix 35
AD8
B
745 751Right-handed 310
Helix 36
AD9
B
768 774Right-handed 310
Helix 37
AE1
B
778 780Right-handed 310
Helix 38
AE2
B
785 790Right-handed alpha
Helix 39
AE3
B
793 801Right-handed alpha
Helix 40
AE4
C
396 409Right-handed alpha
Helix 41
AE5
C
410 416Right-handed alpha
Helix 42
AE6
C
437 443Right-handed 310
Helix 43
AE7
C
460 466Right-handed 310
Helix 44
AE8
C
482 493Right-handed alpha
Helix 45
AE9
C
502 506Right-handed 310
Helix 46
AF1
C
507 513Right-handed 310
Helix 47
AF2
C
559 564Right-handed 310
Helix 48
AF3
C
583 588Right-handed 310
Helix 49
AF4
C
605 611Right-handed 310
Helix 50
AF5
C
627 636Right-handed 310
Helix 51
AF6
C
653 659Right-handed 310
Helix 52
AF7
C
676 682Right-handed 310
Helix 53
AF8
C
699 705Right-handed 310
Helix 54
AF9
C
722 728Right-handed 310
Helix 55
AG1
C
745 751Right-handed 310
Helix 56
AG2
C
768 774Right-handed 310
Helix 57
AG3
C
785 790Right-handed alpha
Helix 58
AG4
C
793 802Right-handed alpha
Helix 59
AG5
D
395 409Right-handed alpha
Helix 60
AG6
D
410 416Right-handed alpha
Helix 61
AG7
D
437 443Right-handed 310
Helix 62
AG8
D
460 466Right-handed 310
Helix 63
AG9
D
482 493Right-handed alpha
Helix 64
AH1
D
507 513Right-handed 310
Helix 65
AH2
D
557 562Right-handed alpha
Helix 66
AH3
D
583 588Right-handed 310
Helix 67
AH4
D
605 611Right-handed 310
Helix 68
AH5
D
629 636Right-handed 310
Helix 69
AH6
D
653 659Right-handed 310
Helix 70
AH7
D
676 682Right-handed 310
Helix 71
AH8
D
699 705Right-handed 310
Helix 72
AH9
D
722 728Right-handed 310
Helix 73
AI1
D
745 751Right-handed 310
Helix 74
AI2
D
768 774Right-handed 310
Helix 75
AI3
D
785 790Right-handed alpha
Helix 76
AI4
D
793 801Right-handed alpha
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There are 8 sheets in PDB entry 8BEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
426 430anti-parallel
Strand 3
A
448 452parallel
Strand 4
A
471 475parallel
Strand 5
A
495 499parallel
Strand 6
A
518 522parallel
Strand 7
A
546 550parallel
Strand 8
A
569 573parallel
Strand 9
A
593 597parallel
Strand 10
A
616 618parallel
Strand 11
A
641 643parallel
Strand 12
A
664 666parallel
Strand 13
A
687 689parallel
Strand 14
A
710 712parallel
Strand 15
A
733 735parallel
Strand 16
A
756 758parallel
Strand 17
A
782 783parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
479 481parallel
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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
426 431anti-parallel
Strand 3
B
448 452parallel
Strand 4
B
471 475parallel
Strand 5
B
495 499parallel
Strand 6
B
518 522parallel
Strand 7
B
546 550parallel
Strand 8
B
569 573parallel
Strand 9
B
593 597parallel
Strand 10
B
616 618parallel
Strand 11
B
641 643parallel
Strand 12
B
664 666parallel
Strand 13
B
687 689parallel
Strand 14
B
710 712parallel
Strand 15
B
733 735parallel
Strand 16
B
756 758parallel
Strand 17
B
782 783parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 459first strand
Strand 2
B
479 481parallel
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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
419 420first strand
Strand 2
C
426 431anti-parallel
Strand 3
C
448 452parallel
Strand 4
C
471 475parallel
Strand 5
C
495 500parallel
Strand 6
C
518 523parallel
Strand 7
C
546 550parallel
Strand 8
C
569 573parallel
Strand 9
C
593 597parallel
Strand 10
C
616 618parallel
Strand 11
C
641 643parallel
Strand 12
C
664 666parallel
Strand 13
C
687 689parallel
Strand 14
C
710 712parallel
Strand 15
C
733 735parallel
Strand 16
C
756 758parallel
Strand 17
C
782 783parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 459first strand
Strand 2
C
479 481parallel
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There are 17 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
419 420first strand
Strand 2
D
426 431anti-parallel
Strand 3
D
448 452parallel
Strand 4
D
471 475parallel
Strand 5
D
495 499parallel
Strand 6
D
518 522parallel
Strand 7
D
546 549parallel
Strand 8
D
569 573parallel
Strand 9
D
593 597parallel
Strand 10
D
616 618parallel
Strand 11
D
641 643parallel
Strand 12
D
664 666parallel
Strand 13
D
687 689parallel
Strand 14
D
710 712parallel
Strand 15
D
733 735parallel
Strand 16
D
756 758parallel
Strand 17
D
782 783parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
457 459first strand
Strand 2
D
479 481parallel
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