Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEP entry

There are 8 chains in PDB entry 8BEP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 53	PHE 502
B	SER 45	TYR 531
D	GLU 76	VAL 92
F	ARG 7	PRO 122
K	ALA 52	PHE 502
L	SER 45	TYR 531
N	VAL 77	VAL 92
P	ARG 7	PRO 122

There are100 helices in PDB entry 8BEP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	112	Right-handed 310
Helix 2	AA2	A	118	126	Right-handed alpha
Helix 3	AA3	A	135	146	Right-handed alpha
Helix 4	AA4	A	169	183	Right-handed alpha
Helix 5	AA5	A	187	204	Right-handed alpha
Helix 6	AA6	A	205	207	Right-handed 310
Helix 7	AA7	A	208	222	Right-handed alpha
Helix 8	AA8	A	224	228	Right-handed 310
Helix 9	AA9	A	233	238	Right-handed alpha
Helix 10	AB1	A	241	253	Right-handed alpha
Helix 11	AB2	A	254	256	Right-handed 310
Helix 12	AB3	A	266	279	Right-handed alpha
Helix 13	AB4	A	323	336	Right-handed alpha
Helix 14	AB5	A	352	362	Right-handed alpha
Helix 15	AB6	A	391	409	Right-handed alpha
Helix 16	AB7	A	412	431	Right-handed alpha
Helix 17	AB8	A	433	448	Right-handed alpha
Helix 18	AB9	A	453	462	Right-handed alpha
Helix 19	AC1	A	465	478	Right-handed alpha
Helix 20	AC2	A	494	502	Right-handed alpha
Helix 21	AC3	B	52	70	Right-handed alpha
Helix 22	AC4	B	72	77	Right-handed 310
Helix 23	AC5	B	128	132	Right-handed 310
Helix 24	AC6	B	138	147	Right-handed alpha
Helix 25	AC7	B	155	166	Right-handed alpha
Helix 26	AC8	B	189	203	Right-handed alpha
Helix 27	AC9	B	207	224	Right-handed alpha
Helix 28	AD1	B	228	242	Right-handed alpha
Helix 29	AD2	B	245	249	Right-handed 310
Helix 30	AD3	B	254	260	Right-handed alpha
Helix 31	AD4	B	262	274	Right-handed alpha
Helix 32	AD5	B	275	277	Right-handed 310
Helix 33	AD6	B	288	300	Right-handed alpha
Helix 34	AD7	B	309	317	Right-handed alpha
Helix 35	AD8	B	350	363	Right-handed alpha
Helix 36	AD9	B	371	375	Right-handed 310
Helix 37	AE1	B	377	387	Right-handed alpha
Helix 38	AE2	B	412	414	Right-handed 310
Helix 39	AE3	B	415	430	Right-handed alpha
Helix 40	AE4	B	435	454	Right-handed alpha
Helix 41	AE5	B	456	471	Right-handed alpha
Helix 42	AE6	B	476	486	Right-handed alpha
Helix 43	AE7	B	488	500	Right-handed alpha
Helix 44	AE8	B	518	525	Right-handed alpha
Helix 45	AE9	D	78	86	Right-handed alpha
Helix 46	AF1	F	14	31	Right-handed alpha
Helix 47	AF2	F	34	39	Right-handed 310
Helix 48	AF3	F	44	54	Right-handed alpha
Helix 49	AF4	F	55	76	Right-handed alpha
Helix 50	AF5	F	80	85	Right-handed alpha
Helix 51	AF6	F	94	111	Right-handed alpha
Helix 52	AF7	K	108	112	Right-handed 310
Helix 53	AF8	K	118	126	Right-handed alpha
Helix 54	AF9	K	135	146	Right-handed alpha
Helix 55	AG1	K	169	183	Right-handed alpha
Helix 56	AG2	K	187	204	Right-handed alpha
Helix 57	AG3	K	208	221	Right-handed alpha
Helix 58	AG4	K	224	228	Right-handed 310
Helix 59	AG5	K	241	251	Right-handed alpha
Helix 60	AG6	K	254	256	Right-handed 310
Helix 61	AG7	K	266	279	Right-handed alpha
Helix 62	AG8	K	325	336	Right-handed alpha
Helix 63	AG9	K	354	359	Right-handed alpha
Helix 64	AH1	K	393	408	Right-handed alpha
Helix 65	AH2	K	412	431	Right-handed alpha
Helix 66	AH3	K	433	448	Right-handed alpha
Helix 67	AH4	K	453	463	Right-handed alpha
Helix 68	AH5	K	465	478	Right-handed alpha
Helix 69	AH6	K	494	500	Right-handed alpha
Helix 70	AH7	L	52	67	Right-handed alpha
Helix 71	AH8	L	72	76	Right-handed 310
Helix 72	AH9	L	89	93	Right-handed 310
Helix 73	AI1	L	128	132	Right-handed 310
Helix 74	AI2	L	138	147	Right-handed alpha
Helix 75	AI3	L	155	167	Right-handed alpha
Helix 76	AI4	L	189	203	Right-handed alpha
Helix 77	AI5	L	207	225	Right-handed alpha
Helix 78	AI6	L	228	242	Right-handed alpha
Helix 79	AI7	L	245	249	Right-handed 310
Helix 80	AI8	L	254	259	Right-handed alpha
Helix 81	AI9	L	262	274	Right-handed alpha
Helix 82	AJ1	L	275	277	Right-handed 310
Helix 83	AJ2	L	288	300	Right-handed alpha
Helix 84	AJ3	L	309	317	Right-handed alpha
Helix 85	AJ4	L	350	363	Right-handed alpha
Helix 86	AJ5	L	377	387	Right-handed alpha
Helix 87	AJ6	L	412	414	Right-handed 310
Helix 88	AJ7	L	415	430	Right-handed alpha
Helix 89	AJ8	L	435	453	Right-handed alpha
Helix 90	AJ9	L	456	471	Right-handed alpha
Helix 91	AK1	L	476	486	Right-handed alpha
Helix 92	AK2	L	488	500	Right-handed alpha
Helix 93	AK3	L	518	525	Right-handed alpha
Helix 94	AK4	N	78	86	Right-handed alpha
Helix 95	AK5	P	14	30	Right-handed alpha
Helix 96	AK6	P	34	39	Right-handed 310
Helix 97	AK7	P	44	53	Right-handed alpha
Helix 98	AK8	P	55	76	Right-handed alpha
Helix 99	AK9	P	80	85	Right-handed alpha
Helix 100	AL1	P	94	111	Right-handed alpha

There are 10 sheets in PDB entry 8BEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	88	92	anti-parallel
Strand 3	A	258	263	parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	159	166	anti-parallel
Strand 6	A	149	154	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	302	first strand
Strand 2	A	482	487	parallel
Strand 3	A	309	316	anti-parallel
Strand 4	A	379	383	anti-parallel
Strand 5	A	368	374	anti-parallel
Strand 6	A	337	338	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	279	285	parallel
Strand 4	B	118	125	anti-parallel
Strand 5	B	179	186	anti-parallel
Strand 6	B	169	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	329	first strand
Strand 2	B	506	511	parallel
Strand 3	B	336	343	anti-parallel
Strand 4	B	403	411	anti-parallel
Strand 5	B	391	398	anti-parallel
Strand 6	B	364	366	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	79	82	first strand
Strand 2	K	88	92	anti-parallel
Strand 3	K	258	263	parallel
Strand 4	K	98	105	anti-parallel
Strand 5	K	159	166	anti-parallel
Strand 6	K	149	154	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	222	223	first strand
Strand 2	K	293	294	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	297	298	first strand
Strand 2	K	482	487	parallel
Strand 3	K	308	316	anti-parallel
Strand 4	K	379	383	anti-parallel
Strand 5	K	370	374	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	301	302	first strand
Strand 2	K	482	487	parallel
Strand 3	K	308	316	anti-parallel
Strand 4	K	386	387	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	97	101	first strand
Strand 2	L	107	112	anti-parallel
Strand 3	L	279	285	parallel
Strand 4	L	118	125	anti-parallel
Strand 5	L	179	186	anti-parallel
Strand 6	L	169	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	324	329	first strand
Strand 2	L	506	511	parallel
Strand 3	L	336	343	anti-parallel
Strand 4	L	403	411	anti-parallel
Strand 5	L	391	398	anti-parallel
Strand 6	L	364	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEP