Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEQ entry

There are 2 chains in PDB entry 8BEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 140	GLN 673
B	SER 142	GLN 673

There are 16 helices in PDB entry 8BEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	154	Right-handed alpha
Helix 2	AA2	A	329	331	Right-handed 310
Helix 3	AA3	A	456	459	Right-handed 310
Helix 4	AA4	A	490	492	Right-handed 310
Helix 5	AA5	A	529	535	Right-handed alpha
Helix 6	AA6	A	536	539	Right-handed 310
Helix 7	AA7	A	587	590	Right-handed 310
Helix 8	AA8	A	591	597	Right-handed alpha
Helix 9	AA9	B	149	154	Right-handed alpha
Helix 10	AB1	B	329	331	Right-handed 310
Helix 11	AB2	B	456	459	Right-handed 310
Helix 12	AB3	B	490	492	Right-handed 310
Helix 13	AB4	B	529	535	Right-handed alpha
Helix 14	AB5	B	536	539	Right-handed 310
Helix 15	AB6	B	587	590	Right-handed 310
Helix 16	AB7	B	591	597	Right-handed alpha

There are 16 sheets in PDB entry 8BEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	236	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	200	207	anti-parallel
Strand 4	A	184	194	anti-parallel
Strand 5	A	461	462	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	252	first strand
Strand 2	A	268	275	anti-parallel
Strand 3	A	280	287	anti-parallel
Strand 4	A	295	296	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	321	328	anti-parallel
Strand 3	A	333	339	anti-parallel
Strand 4	A	346	352	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	B	414	418	parallel
Strand 3	B	396	404	anti-parallel
Strand 4	B	374	386	anti-parallel
Strand 5	B	361	371	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	B	414	418	parallel
Strand 3	B	396	404	anti-parallel
Strand 4	B	409	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	371	first strand
Strand 2	A	374	386	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	409	411	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	371	first strand
Strand 2	A	374	386	anti-parallel
Strand 3	A	396	404	anti-parallel
Strand 4	A	414	418	anti-parallel
Strand 5	B	354	356	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	430	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	469	476	anti-parallel
Strand 4	A	480	487	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	501	first strand
Strand 2	A	660	668	anti-parallel
Strand 3	A	519	527	anti-parallel
Strand 4	A	614	620	anti-parallel
Strand 5	A	623	628	anti-parallel
Strand 6	A	633	638	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	511	first strand
Strand 2	A	645	653	anti-parallel
Strand 3	A	544	551	anti-parallel
Strand 4	A	568	573	anti-parallel
Strand 5	A	581	585	anti-parallel
Strand 6	A	603	607	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	236	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	200	207	anti-parallel
Strand 4	B	184	194	anti-parallel
Strand 5	B	461	462	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	252	first strand
Strand 2	B	268	275	anti-parallel
Strand 3	B	280	287	anti-parallel
Strand 4	B	295	296	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	321	328	anti-parallel
Strand 3	B	333	339	anti-parallel
Strand 4	B	346	352	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	430	first strand
Strand 2	B	440	444	anti-parallel
Strand 3	B	469	476	anti-parallel
Strand 4	B	480	487	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	501	first strand
Strand 2	B	660	668	anti-parallel
Strand 3	B	519	527	anti-parallel
Strand 4	B	614	620	anti-parallel
Strand 5	B	623	628	anti-parallel
Strand 6	B	633	638	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	511	first strand
Strand 2	B	645	653	anti-parallel
Strand 3	B	544	551	anti-parallel
Strand 4	B	568	573	anti-parallel
Strand 5	B	581	585	anti-parallel
Strand 6	B	603	607	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEQ