Analysis of interatomic Contacts of Structural Units in PDB entry:
8BER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BER entry

There are 3 chains in PDB entry 8BER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 284
B
 MET 1PRO 284
C
 MET 1PRO 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8BER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
10 15Right-handed alpha
Helix 3
AA3
A
16 17Right-handed 310
Helix 4
AA4
A
18 22Right-handed 310
Helix 5
AA5
A
24 41Right-handed alpha
Helix 6
AA6
A
47 73Right-handed alpha
Helix 7
AA7
A
222 232Right-handed alpha
Helix 8
AA8
A
232 250Right-handed alpha
Helix 9
AA9
A
251 268Right-handed alpha
Helix 10
AB1
B
10 16Right-handed alpha
Helix 11
AB2
B
17 22Right-handed 310
Helix 12
AB3
B
24 36Right-handed alpha
Helix 13
AB4
B
36 41Right-handed alpha
Helix 14
AB5
B
47 73Right-handed alpha
Helix 15
AB6
B
222 232Right-handed alpha
Helix 16
AB7
B
232 251Right-handed alpha
Helix 17
AB8
B
251 268Right-handed alpha
Helix 18
AB9
C
10 15Right-handed alpha
Helix 19
AC1
C
16 17Right-handed 310
Helix 20
AC2
C
18 22Right-handed 310
Helix 21
AC3
C
24 42Right-handed alpha
Helix 22
AC4
C
47 73Right-handed alpha
Helix 23
AC5
C
224 251Right-handed alpha
Helix 24
AC6
C
251 268Right-handed alpha
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There are no sheets in PDB entry 8BER
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