Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BEX entry

There are 2 chains in PDB entry 8BEX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 49	ASN 464
B	ASN 49	ASN 464

There are 18 helices in PDB entry 8BEX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	109	112	Right-handed 310
Helix 3	AA3	A	154	156	Right-handed 310
Helix 4	AA4	A	184	186	Right-handed 310
Helix 5	AA5	A	259	261	Right-handed 310
Helix 6	AA6	A	267	275	Right-handed alpha
Helix 7	AA7	A	309	321	Right-handed alpha
Helix 8	AA8	A	338	340	Right-handed 310
Helix 9	AA9	A	341	350	Right-handed alpha
Helix 10	AB1	B	53	57	Right-handed 310
Helix 11	AB2	B	109	112	Right-handed 310
Helix 12	AB3	B	154	156	Right-handed 310
Helix 13	AB4	B	184	186	Right-handed 310
Helix 14	AB5	B	259	261	Right-handed 310
Helix 15	AB6	B	267	275	Right-handed alpha
Helix 16	AB7	B	309	321	Right-handed alpha
Helix 17	AB8	B	338	340	Right-handed 310
Helix 18	AB9	B	341	350	Right-handed alpha

There are 19 sheets in PDB entry 8BEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	212	213	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	100	104	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	124	128	anti-parallel
Strand 3	A	158	165	anti-parallel
Strand 4	A	168	173	anti-parallel
Strand 5	A	178	182	anti-parallel
Strand 6	A	193	196	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	140	first strand
Strand 2	A	143	149	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	257	first strand
Strand 2	A	277	294	anti-parallel
Strand 3	A	377	391	anti-parallel
Strand 4	A	402	415	anti-parallel
Strand 5	A	452	453	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	307	first strand
Strand 2	A	362	370	anti-parallel
Strand 3	A	420	431	anti-parallel
Strand 4	A	444	447	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	352	353	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	440	first strand
Strand 2	A	459	461	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	212	213	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	100	104	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	124	128	anti-parallel
Strand 3	B	158	165	anti-parallel
Strand 4	B	168	173	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	140	first strand
Strand 2	B	143	149	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	193	196	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	257	first strand
Strand 2	B	277	294	anti-parallel
Strand 3	B	377	391	anti-parallel
Strand 4	B	402	415	anti-parallel
Strand 5	B	452	453	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	307	first strand
Strand 2	B	362	370	anti-parallel
Strand 3	B	420	431	anti-parallel
Strand 4	B	444	447	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	352	353	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	440	first strand
Strand 2	B	459	461	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BEX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BEX