Analysis of interatomic Contacts of Structural Units in PDB entry:
8BF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BF4 entry

There are 6 chains in PDB entry 8BF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 2	ALA 118
F	PRO 23	LEU 534
E	VAL 2	SER 123
A	GLN 1	HIS 119
C	PRO 25	LEU 534
B	VAL 2	ALA 124

There are 24 helices in PDB entry 8BF4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	87	91	Right-handed 310
Helix 2	AA2	D	101	105	Right-handed 310
Helix 3	AA3	F	114	117	Right-handed 310
Helix 4	AA4	F	193	197	Right-handed 310
Helix 5	AA5	F	210	215	Right-handed alpha
Helix 6	AA6	F	239	242	Right-handed 310
Helix 7	AA7	F	326	343	Right-handed alpha
Helix 8	AA8	F	370	375	Right-handed alpha
Helix 9	AA9	F	487	494	Right-handed alpha
Helix 10	AB1	F	510	514	Right-handed 310
Helix 11	AB2	E	62	65	Right-handed 310
Helix 12	AB3	E	87	91	Right-handed 310
Helix 13	AB4	A	101	105	Right-handed 310
Helix 14	AB5	C	114	117	Right-handed 310
Helix 15	AB6	C	138	142	Right-handed 310
Helix 16	AB7	C	193	197	Right-handed 310
Helix 17	AB8	C	210	215	Right-handed alpha
Helix 18	AB9	C	239	242	Right-handed 310
Helix 19	AC1	C	326	343	Right-handed alpha
Helix 20	AC2	C	370	375	Right-handed alpha
Helix 21	AC3	C	487	494	Right-handed alpha
Helix 22	AC4	C	510	514	Right-handed 310
Helix 23	AC5	B	62	65	Right-handed 310
Helix 24	AC6	B	87	91	Right-handed 310

There are 30 sheets in PDB entry 8BF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	112	117	parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	473	478	anti-parallel
Strand 3	F	465	469	anti-parallel
Strand 4	F	458	459	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	54	58	anti-parallel
Strand 4	F	64	69	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	75	first strand
Strand 2	F	92	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	104	first strand
Strand 2	F	107	112	anti-parallel
Strand 3	F	119	123	anti-parallel
Strand 4	F	126	132	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	158	first strand
Strand 2	F	164	170	anti-parallel
Strand 3	F	184	188	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	224	first strand
Strand 2	F	227	236	anti-parallel
Strand 3	F	243	252	anti-parallel
Strand 4	F	262	268	anti-parallel
Strand 5	F	386	388	parallel
Strand 6	F	354	356	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	224	first strand
Strand 2	F	227	236	anti-parallel
Strand 3	F	243	252	anti-parallel
Strand 4	F	262	268	anti-parallel
Strand 5	F	392	394	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	281	first strand
Strand 2	F	292	297	anti-parallel
Strand 3	F	319	325	anti-parallel
Strand 4	F	396	400	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	413	first strand
Strand 2	F	416	423	anti-parallel
Strand 3	F	427	434	anti-parallel
Strand 4	F	440	446	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	508	509	first strand
Strand 2	F	500	502	anti-parallel
Strand 3	F	523	525	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	113	114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	93	97	anti-parallel
Strand 5	A	112	113	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	473	478	anti-parallel
Strand 3	C	465	469	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	47	51	anti-parallel
Strand 3	C	54	58	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	92	94	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	126	132	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	157	first strand
Strand 2	C	165	170	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	200	205	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	236	anti-parallel
Strand 3	C	243	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	386	388	parallel
Strand 6	C	354	356	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	236	anti-parallel
Strand 3	C	243	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	392	394	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	281	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	319	325	anti-parallel
Strand 4	C	396	400	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	413	first strand
Strand 2	C	416	423	anti-parallel
Strand 3	C	427	432	anti-parallel
Strand 4	C	440	446	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	509	first strand
Strand 2	C	500	502	anti-parallel
Strand 3	C	523	525	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	118	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	118	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BF4