Analysis of interatomic Contacts of Structural Units in PDB entry:
8BF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BF9 entry

There are 19 chains in PDB entry 8BF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
5	A 39	G 3355
8	U 22	G 139
A	SER 82	VAL 241
B	GLU 21	ASP 179
D	GLU 24	ALA 173
G	SER 28	LYS 185
P	TYR 4	GLU 154
R	SER 2	ASN 86
U	GLN 17	PHE 115
X	LYS 38	ILE 156
Y	MET 1	GLU 131
C	PRO 11	SER 467
b	UNK 24	UNK 52
d	ASN 18	GLU 124
g	PHE 7	ASN 63
h	ALA 2	ALA 123
j	THR 2	LYS 87
k	PRO 2	LEU 69
l	HIS 4	LEU 51

There are 75 helices in PDB entry 8BF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	204	233	Right-handed alpha
Helix 2	AA2	B	150	158	Right-handed alpha
Helix 3	AA3	B	161	179	Right-handed alpha
Helix 4	AA4	D	93	97	Right-handed 310
Helix 5	AA5	D	108	119	Right-handed alpha
Helix 6	AA6	D	120	122	Right-handed 310
Helix 7	AA7	D	124	128	Right-handed 310
Helix 8	AA8	D	153	158	Right-handed 310
Helix 9	AA9	D	159	173	Right-handed alpha
Helix 10	AB1	G	29	47	Right-handed alpha
Helix 11	AB2	G	54	92	Right-handed alpha
Helix 12	AB3	G	92	105	Right-handed alpha
Helix 13	AB4	G	106	111	Right-handed alpha
Helix 14	AB5	G	115	156	Right-handed alpha
Helix 15	AB6	G	157	159	Right-handed 310
Helix 16	AB7	G	161	183	Right-handed alpha
Helix 17	AB8	P	25	37	Right-handed alpha
Helix 18	AB9	P	40	53	Right-handed alpha
Helix 19	AC1	P	70	77	Right-handed 310
Helix 20	AC2	P	84	105	Right-handed alpha
Helix 21	AC3	P	108	110	Right-handed 310
Helix 22	AC4	R	4	16	Right-handed alpha
Helix 23	AC5	R	41	47	Right-handed alpha
Helix 24	AC6	R	60	73	Right-handed alpha
Helix 25	AC7	R	77	81	Right-handed 310
Helix 26	AC8	U	25	31	Right-handed alpha
Helix 27	AC9	U	35	40	Right-handed alpha
Helix 28	AD1	U	79	94	Right-handed alpha
Helix 29	AD2	X	72	76	Right-handed alpha
Helix 30	AD3	X	83	93	Right-handed alpha
Helix 31	AD4	X	105	118	Right-handed alpha
Helix 32	AD5	X	145	154	Right-handed alpha
Helix 33	AD6	Y	10	20	Right-handed alpha
Helix 34	AD7	Y	22	30	Right-handed alpha
Helix 35	AD8	Y	35	43	Right-handed alpha
Helix 36	AD9	Y	100	102	Right-handed 310
Helix 37	AE1	Y	112	131	Right-handed alpha
Helix 38	AE2	C	27	35	Right-handed alpha
Helix 39	AE3	C	64	68	Right-handed 310
Helix 40	AE4	C	80	95	Right-handed alpha
Helix 41	AE5	C	107	135	Right-handed alpha
Helix 42	AE6	C	148	154	Right-handed 310
Helix 43	AE7	C	155	160	Right-handed alpha
Helix 44	AE8	C	163	170	Right-handed alpha
Helix 45	AE9	C	179	201	Right-handed alpha
Helix 46	AF1	C	216	221	Right-handed alpha
Helix 47	AF2	C	240	243	Right-handed 310
Helix 48	AF3	C	244	261	Right-handed alpha
Helix 49	AF4	C	288	310	Right-handed alpha
Helix 50	AF5	C	358	384	Right-handed alpha
Helix 51	AF6	C	387	398	Right-handed alpha
Helix 52	AF7	C	407	416	Right-handed alpha
Helix 53	AF8	C	417	440	Right-handed alpha
Helix 54	AF9	C	447	465	Right-handed alpha
Helix 55	AG1	b	30	42	Right-handed alpha
Helix 56	AG2	d	29	33	Right-handed alpha
Helix 57	AG3	d	40	58	Right-handed alpha
Helix 58	AG4	d	65	73	Right-handed alpha
Helix 59	AG5	d	74	76	Right-handed 310
Helix 60	AG6	g	8	25	Right-handed alpha
Helix 61	AG7	g	32	55	Right-handed alpha
Helix 62	AG8	g	58	63	Right-handed 310
Helix 63	AG9	h	5	10	Right-handed alpha
Helix 64	AH1	h	13	35	Right-handed alpha
Helix 65	AH2	h	41	74	Right-handed alpha
Helix 66	AH3	h	80	84	Right-handed 310
Helix 67	AH4	h	88	93	Right-handed alpha
Helix 68	AH5	h	104	114	Right-handed alpha
Helix 69	AH6	j	4	9	Right-handed alpha
Helix 70	AH7	j	50	57	Right-handed alpha
Helix 71	AH8	j	66	75	Right-handed alpha
Helix 72	AH9	k	7	16	Right-handed alpha
Helix 73	AI1	k	49	59	Right-handed alpha
Helix 74	AI2	l	6	19	Right-handed alpha
Helix 75	AI3	l	24	30	Right-handed 310

There are 20 sheets in PDB entry 8BF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	101	108	anti-parallel
Strand 3	A	151	158	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	144	146	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	178	first strand
Strand 2	A	184	187	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	72	73	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	60	63	anti-parallel
Strand 3	B	112	116	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	108	first strand
Strand 2	B	132	136	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	49	54	anti-parallel
Strand 3	D	87	90	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	67	70	anti-parallel
Strand 3	D	102	107	anti-parallel
Strand 4	D	132	136	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	14	22	first strand
Strand 2	P	144	152	anti-parallel
Strand 3	P	112	121	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	58	59	first strand
Strand 2	P	81	82	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	125	131	first strand
Strand 2	P	135	141	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	22	24	first strand
Strand 2	R	50	52	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	101	103	first strand
Strand 2	U	109	113	anti-parallel
Strand 3	U	106	106	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	77	80	first strand
Strand 2	X	95	100	anti-parallel
Strand 3	X	134	140	anti-parallel
Strand 4	X	121	128	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	31	33	first strand
Strand 2	Y	46	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	79	82	first strand
Strand 2	Y	68	74	anti-parallel
Strand 3	Y	54	57	anti-parallel
Strand 4	Y	104	108	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	86	88	first strand
Strand 2	Y	94	96	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	263	270	anti-parallel
Strand 3	C	400	401	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	62	64	first strand
Strand 2	d	103	108	parallel
Strand 3	d	83	91	anti-parallel
Strand 4	d	22	28	anti-parallel
Strand 5	d	120	121	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	3	5	first strand
Strand 2	k	42	47	parallel
Strand 3	k	32	37	anti-parallel
Strand 4	k	22	27	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BF9