Analysis of interatomic Contacts of Structural Units in PDB entry:
8BFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BFF entry

There are 3 chains in PDB entry 8BFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207LEU 476
B
 GLU 207LEU 476
C
 GLU 207LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8BFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
207 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
251 260Right-handed alpha
Helix 4
AA4
A
278 303Right-handed alpha
Helix 5
AA5
A
310 333Right-handed alpha
Helix 6
AA6
A
350 355Right-handed alpha
Helix 7
AA7
A
364 377Right-handed alpha
Helix 8
AA8
A
380 393Right-handed alpha
Helix 9
AA9
A
402 425Right-handed alpha
Helix 10
AB1
A
430 460Right-handed alpha
Helix 11
AB2
A
466 474Right-handed alpha
Helix 12
AB3
B
208 226Right-handed alpha
Helix 13
AB4
B
229 238Right-handed alpha
Helix 14
AB5
B
251 259Right-handed alpha
Helix 15
AB6
B
278 303Right-handed alpha
Helix 16
AB7
B
310 333Right-handed alpha
Helix 17
AB8
B
350 355Right-handed alpha
Helix 18
AB9
B
357 362Right-handed alpha
Helix 19
AC1
B
364 377Right-handed alpha
Helix 20
AC2
B
380 393Right-handed alpha
Helix 21
AC3
B
402 425Right-handed alpha
Helix 22
AC4
B
430 460Right-handed alpha
Helix 23
AC5
B
466 474Right-handed alpha
Helix 24
AC6
C
208 226Right-handed alpha
Helix 25
AC7
C
229 238Right-handed alpha
Helix 26
AC8
C
251 259Right-handed alpha
Helix 27
AC9
C
278 303Right-handed alpha
Helix 28
AD1
C
310 331Right-handed alpha
Helix 29
AD2
C
332 334Right-handed 310
Helix 30
AD3
C
350 355Right-handed alpha
Helix 31
AD4
C
357 363Right-handed alpha
Helix 32
AD5
C
364 377Right-handed alpha
Helix 33
AD6
C
380 393Right-handed alpha
Helix 34
AD7
C
402 425Right-handed alpha
Helix 35
AD8
C
430 460Right-handed alpha
Helix 36
AD9
C
466 474Right-handed alpha
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There are 3 sheets in PDB entry 8BFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 249first strand
Strand 2
C
346 349parallel
Strand 3
C
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il