Analysis of interatomic Contacts of Structural Units in PDB entry:
8BFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BFN entry

There are 10 chains in PDB entry 8BFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1095
B	MET 1	ALA 1095
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498
F	MET 1	ALA 1095
G	MET 1	ALA 1095
H	SER 40	THR 234
I	SER 40	THR 234
J	MET 1	GLU 498

There are181 helices in PDB entry 8BFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	48	61	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	79	86	Right-handed alpha
Helix 5	AA5	A	135	137	Right-handed 310
Helix 6	AA6	A	152	175	Right-handed alpha
Helix 7	AA7	A	183	196	Right-handed alpha
Helix 8	AA8	A	198	208	Right-handed alpha
Helix 9	AA9	A	209	211	Right-handed 310
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	231	283	Right-handed alpha
Helix 12	AB3	A	783	808	Right-handed alpha
Helix 13	AB4	A	810	814	Right-handed 310
Helix 14	AB5	A	818	820	Right-handed 310
Helix 15	AB6	A	821	835	Right-handed alpha
Helix 16	AB7	A	835	851	Right-handed alpha
Helix 17	AB8	A	856	883	Right-handed alpha
Helix 18	AB9	A	901	918	Right-handed alpha
Helix 19	AC1	A	925	944	Right-handed alpha
Helix 20	AC2	A	947	955	Right-handed alpha
Helix 21	AC3	A	956	959	Right-handed 310
Helix 22	AC4	A	985	1006	Right-handed alpha
Helix 23	AC5	A	1028	1042	Right-handed alpha
Helix 24	AC6	A	1054	1059	Right-handed alpha
Helix 25	AC7	A	1082	1094	Right-handed alpha
Helix 26	AC8	B	2	6	Right-handed alpha
Helix 27	AC9	B	6	11	Right-handed alpha
Helix 28	AD1	B	48	61	Right-handed alpha
Helix 29	AD2	B	67	72	Right-handed alpha
Helix 30	AD3	B	79	86	Right-handed alpha
Helix 31	AD4	B	152	175	Right-handed alpha
Helix 32	AD5	B	183	196	Right-handed alpha
Helix 33	AD6	B	198	210	Right-handed alpha
Helix 34	AD7	B	216	223	Right-handed alpha
Helix 35	AD8	B	231	283	Right-handed alpha
Helix 36	AD9	B	783	808	Right-handed alpha
Helix 37	AE1	B	818	820	Right-handed 310
Helix 38	AE2	B	821	835	Right-handed alpha
Helix 39	AE3	B	835	851	Right-handed alpha
Helix 40	AE4	B	856	884	Right-handed alpha
Helix 41	AE5	B	901	918	Right-handed alpha
Helix 42	AE6	B	924	944	Right-handed alpha
Helix 43	AE7	B	947	955	Right-handed alpha
Helix 44	AE8	B	956	959	Right-handed 310
Helix 45	AE9	B	986	1006	Right-handed alpha
Helix 46	AF1	B	1028	1042	Right-handed alpha
Helix 47	AF2	B	1054	1061	Right-handed alpha
Helix 48	AF3	C	45	59	Right-handed alpha
Helix 49	AF4	C	66	76	Right-handed alpha
Helix 50	AF5	C	76	85	Right-handed alpha
Helix 51	AF6	C	113	117	Right-handed 310
Helix 52	AF7	C	126	146	Right-handed alpha
Helix 53	AF8	C	158	170	Right-handed alpha
Helix 54	AF9	C	174	192	Right-handed alpha
Helix 55	AG1	C	208	214	Right-handed alpha
Helix 56	AG2	C	215	234	Right-handed alpha
Helix 57	AG3	D	45	59	Right-handed alpha
Helix 58	AG4	D	66	76	Right-handed alpha
Helix 59	AG5	D	76	85	Right-handed alpha
Helix 60	AG6	D	126	148	Right-handed alpha
Helix 61	AG7	D	158	170	Right-handed alpha
Helix 62	AG8	D	174	192	Right-handed alpha
Helix 63	AG9	D	207	212	Right-handed 310
Helix 64	AH1	D	215	234	Right-handed alpha
Helix 65	AH2	E	2	19	Right-handed alpha
Helix 66	AH3	E	19	27	Right-handed alpha
Helix 67	AH4	E	29	44	Right-handed alpha
Helix 68	AH5	E	50	64	Right-handed alpha
Helix 69	AH6	E	76	90	Right-handed alpha
Helix 70	AH7	E	104	118	Right-handed alpha
Helix 71	AH8	E	129	144	Right-handed alpha
Helix 72	AH9	E	146	170	Right-handed alpha
Helix 73	AI1	E	177	194	Right-handed alpha
Helix 74	AI2	E	195	197	Right-handed 310
Helix 75	AI3	E	198	220	Right-handed alpha
Helix 76	AI4	E	224	232	Right-handed alpha
Helix 77	AI5	E	245	256	Right-handed alpha
Helix 78	AI6	E	258	273	Right-handed alpha
Helix 79	AI7	E	273	280	Right-handed alpha
Helix 80	AI8	E	281	290	Right-handed alpha
Helix 81	AI9	E	290	318	Right-handed alpha
Helix 82	AJ1	E	321	339	Right-handed alpha
Helix 83	AJ2	E	340	342	Right-handed 310
Helix 84	AJ3	E	346	351	Right-handed alpha
Helix 85	AJ4	E	368	370	Right-handed 310
Helix 86	AJ5	E	378	391	Right-handed alpha
Helix 87	AJ6	E	398	406	Right-handed alpha
Helix 88	AJ7	E	409	425	Right-handed alpha
Helix 89	AJ8	E	429	437	Right-handed alpha
Helix 90	AJ9	E	442	456	Right-handed alpha
Helix 91	AK1	E	488	495	Right-handed alpha
Helix 92	AK2	F	2	6	Right-handed alpha
Helix 93	AK3	F	48	61	Right-handed alpha
Helix 94	AK4	F	79	86	Right-handed alpha
Helix 95	AK5	F	135	137	Right-handed 310
Helix 96	AK6	F	152	175	Right-handed alpha
Helix 97	AK7	F	183	196	Right-handed alpha
Helix 98	AK8	F	198	208	Right-handed alpha
Helix 99	AK9	F	209	211	Right-handed 310
Helix 100	AL1	F	216	224	Right-handed alpha
Helix 101	AL2	F	231	283	Right-handed alpha
Helix 102	AL3	F	783	807	Right-handed alpha
Helix 103	AL4	F	810	814	Right-handed 310
Helix 104	AL5	F	818	820	Right-handed 310
Helix 105	AL6	F	821	835	Right-handed alpha
Helix 106	AL7	F	835	851	Right-handed alpha
Helix 107	AL8	F	856	882	Right-handed alpha
Helix 108	AL9	F	901	918	Right-handed alpha
Helix 109	AM1	F	924	944	Right-handed alpha
Helix 110	AM2	F	947	955	Right-handed alpha
Helix 111	AM3	F	956	959	Right-handed 310
Helix 112	AM4	F	985	1006	Right-handed alpha
Helix 113	AM5	F	1028	1042	Right-handed alpha
Helix 114	AM6	F	1054	1060	Right-handed alpha
Helix 115	AM7	F	1082	1094	Right-handed alpha
Helix 116	AM8	G	2	6	Right-handed alpha
Helix 117	AM9	G	6	11	Right-handed alpha
Helix 118	AN1	G	48	61	Right-handed alpha
Helix 119	AN2	G	67	72	Right-handed alpha
Helix 120	AN3	G	79	86	Right-handed alpha
Helix 121	AN4	G	152	175	Right-handed alpha
Helix 122	AN5	G	183	196	Right-handed alpha
Helix 123	AN6	G	198	210	Right-handed alpha
Helix 124	AN7	G	216	223	Right-handed alpha
Helix 125	AN8	G	231	283	Right-handed alpha
Helix 126	AN9	G	783	808	Right-handed alpha
Helix 127	AO1	G	818	820	Right-handed 310
Helix 128	AO2	G	821	835	Right-handed alpha
Helix 129	AO3	G	835	851	Right-handed alpha
Helix 130	AO4	G	856	884	Right-handed alpha
Helix 131	AO5	G	901	918	Right-handed alpha
Helix 132	AO6	G	924	944	Right-handed alpha
Helix 133	AO7	G	947	955	Right-handed alpha
Helix 134	AO8	G	956	959	Right-handed 310
Helix 135	AO9	G	986	1006	Right-handed alpha
Helix 136	AP1	G	1028	1042	Right-handed alpha
Helix 137	AP2	G	1054	1061	Right-handed alpha
Helix 138	AP3	H	45	59	Right-handed alpha
Helix 139	AP4	H	66	76	Right-handed alpha
Helix 140	AP5	H	76	85	Right-handed alpha
Helix 141	AP6	H	113	117	Right-handed 310
Helix 142	AP7	H	126	146	Right-handed alpha
Helix 143	AP8	H	158	170	Right-handed alpha
Helix 144	AP9	H	174	192	Right-handed alpha
Helix 145	AQ1	H	208	214	Right-handed alpha
Helix 146	AQ2	H	215	234	Right-handed alpha
Helix 147	AQ3	I	45	59	Right-handed alpha
Helix 148	AQ4	I	66	76	Right-handed alpha
Helix 149	AQ5	I	76	85	Right-handed alpha
Helix 150	AQ6	I	126	148	Right-handed alpha
Helix 151	AQ7	I	158	170	Right-handed alpha
Helix 152	AQ8	I	174	192	Right-handed alpha
Helix 153	AQ9	I	207	212	Right-handed 310
Helix 154	AR1	I	215	234	Right-handed alpha
Helix 155	AR2	J	2	19	Right-handed alpha
Helix 156	AR3	J	19	27	Right-handed alpha
Helix 157	AR4	J	29	44	Right-handed alpha
Helix 158	AR5	J	50	64	Right-handed alpha
Helix 159	AR6	J	76	90	Right-handed alpha
Helix 160	AR7	J	104	118	Right-handed alpha
Helix 161	AR8	J	129	142	Right-handed alpha
Helix 162	AR9	J	146	170	Right-handed alpha
Helix 163	AS1	J	177	194	Right-handed alpha
Helix 164	AS2	J	195	197	Right-handed 310
Helix 165	AS3	J	198	220	Right-handed alpha
Helix 166	AS4	J	224	232	Right-handed alpha
Helix 167	AS5	J	245	256	Right-handed alpha
Helix 168	AS6	J	258	272	Right-handed alpha
Helix 169	AS7	J	273	280	Right-handed alpha
Helix 170	AS8	J	281	290	Right-handed alpha
Helix 171	AS9	J	290	318	Right-handed alpha
Helix 172	AT1	J	321	339	Right-handed alpha
Helix 173	AT2	J	340	342	Right-handed 310
Helix 174	AT3	J	346	351	Right-handed alpha
Helix 175	AT4	J	368	370	Right-handed 310
Helix 176	AT5	J	378	391	Right-handed alpha
Helix 177	AT6	J	398	406	Right-handed alpha
Helix 178	AT7	J	409	425	Right-handed alpha
Helix 179	AT8	J	429	437	Right-handed alpha
Helix 180	AT9	J	442	456	Right-handed alpha
Helix 181	AU1	J	488	495	Right-handed alpha

There are 26 sheets in PDB entry 8BFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	23	anti-parallel
Strand 3	A	106	116	anti-parallel
Strand 4	A	119	129	anti-parallel
Strand 5	A	139	146	anti-parallel
Strand 6	A	178	181	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1021	first strand
Strand 2	A	1045	1049	parallel
Strand 3	A	39	42	parallel
Strand 4	A	1064	1070	parallel
Strand 5	A	1075	1081	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	963	967	anti-parallel
Strand 3	A	974	978	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	106	116	anti-parallel
Strand 4	B	119	129	anti-parallel
Strand 5	B	139	146	anti-parallel
Strand 6	B	178	181	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1017	1020	first strand
Strand 2	B	1045	1049	parallel
Strand 3	B	39	42	parallel
Strand 4	B	1064	1071	parallel
Strand 5	B	1074	1084	anti-parallel
Strand 6	E	477	480	anti-parallel
Strand 7	E	468	471	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	895	first strand
Strand 2	B	963	967	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	89	94	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	E	372	373	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	203	206	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	100	103	anti-parallel
Strand 3	E	94	97	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	465	first strand
Strand 2	E	483	484	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	32	first strand
Strand 2	F	14	23	anti-parallel
Strand 3	F	106	116	anti-parallel
Strand 4	F	119	129	anti-parallel
Strand 5	F	139	146	anti-parallel
Strand 6	F	178	181	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1017	1021	first strand
Strand 2	F	1045	1049	parallel
Strand 3	F	39	42	parallel
Strand 4	F	1064	1070	parallel
Strand 5	F	1075	1081	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	892	895	first strand
Strand 2	F	963	967	anti-parallel
Strand 3	F	974	978	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	33	first strand
Strand 2	G	14	23	anti-parallel
Strand 3	G	106	116	anti-parallel
Strand 4	G	119	129	anti-parallel
Strand 5	G	139	146	anti-parallel
Strand 6	G	178	181	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1017	1020	first strand
Strand 2	G	1045	1050	parallel
Strand 3	G	39	42	parallel
Strand 4	G	1064	1071	parallel
Strand 5	G	1074	1084	anti-parallel
Strand 6	J	477	481	anti-parallel
Strand 7	J	468	471	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	893	895	first strand
Strand 2	G	963	967	anti-parallel
Strand 3	G	974	976	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	99	104	anti-parallel
Strand 3	H	89	94	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	203	205	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	99	104	anti-parallel
Strand 3	I	89	94	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	124	first strand
Strand 2	J	372	373	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	203	205	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	100	103	anti-parallel
Strand 3	J	94	97	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	461	465	first strand
Strand 2	J	483	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BFN