Analysis of interatomic Contacts of Structural Units in PDB entry:
8BG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BG3 entry

There are 4 chains in PDB entry 8BG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LEU 247
B	LEU 2	CYS 192
C	GLU 1	LEU 247
D	CYS 3	TYR 32

There are 23 helices in PDB entry 8BG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	218	222	Right-handed 310
Helix 4	AA4	B	4	10	Right-handed alpha
Helix 5	AA5	B	16	20	Right-handed 310
Helix 6	AA6	B	31	37	Right-handed alpha
Helix 7	AA7	B	50	55	Right-handed alpha
Helix 8	AA8	B	72	77	Right-handed 310
Helix 9	AA9	B	83	89	Right-handed alpha
Helix 10	AB1	B	105	110	Right-handed alpha
Helix 11	AB2	B	169	172	Right-handed 310
Helix 12	AB3	C	28	32	Right-handed 310
Helix 13	AB4	C	61	64	Right-handed 310
Helix 14	AB5	C	86	90	Right-handed 310
Helix 15	AB6	C	218	222	Right-handed 310
Helix 16	AB7	D	4	10	Right-handed alpha
Helix 17	AB8	D	16	20	Right-handed 310
Helix 18	AB9	D	32	38	Right-handed alpha
Helix 19	AC1	D	50	57	Right-handed 310
Helix 20	AC2	D	72	77	Right-handed 310
Helix 21	AC3	D	83	89	Right-handed alpha
Helix 22	AC4	D	105	110	Right-handed alpha
Helix 23	AC5	D	169	172	Right-handed 310

There are 18 sheets in PDB entry 8BG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	91	97	anti-parallel
Strand 5	A	107	108	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	91	97	anti-parallel
Strand 5	A	112	116	anti-parallel
Strand 6	A	9	12	parallel
Strand 7	D	43	47	anti-parallel
Strand 8	D	98	104	anti-parallel
Strand 9	D	174	183	anti-parallel
Strand 10	D	61	70	anti-parallel
Strand 11	D	21	25	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	242	246	parallel
Strand 3	A	223	230	anti-parallel
Strand 4	A	172	177	anti-parallel
Strand 5	A	184	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	242	246	parallel
Strand 3	A	223	230	anti-parallel
Strand 4	A	236	238	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	209	214	anti-parallel
Strand 3	A	201	206	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	61	70	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	43	47	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	191	192	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	159	161	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	155	156	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	107	108	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	242	246	parallel
Strand 3	C	223	230	anti-parallel
Strand 4	C	172	177	anti-parallel
Strand 5	C	184	187	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	242	246	parallel
Strand 3	C	223	230	anti-parallel
Strand 4	C	236	238	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	209	214	anti-parallel
Strand 3	C	201	206	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	159	161	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	141	first strand
Strand 2	D	155	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BG3