Analysis of interatomic Contacts of Structural Units in PDB entry:
8BG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BG4 entry

There are 4 chains in PDB entry 8BG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	LYS 244
B	ASN 334	ASP 528
C	VAL 2	ILE 243
D	ASN 334	PRO 527

There are 26 helices in PDB entry 8BG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	73	75	Right-handed 310
Helix 3	AA3	A	86	90	Right-handed 310
Helix 4	AA4	A	100	102	Right-handed 310
Helix 5	AA5	A	215	219	Right-handed 310
Helix 6	AA6	B	337	343	Right-handed alpha
Helix 7	AA7	B	349	353	Right-handed 310
Helix 8	AA8	B	364	370	Right-handed alpha
Helix 9	AA9	B	383	389	Right-handed 310
Helix 10	AB1	B	405	410	Right-handed 310
Helix 11	AB2	B	416	422	Right-handed alpha
Helix 12	AB3	B	438	443	Right-handed alpha
Helix 13	AB4	B	502	505	Right-handed 310
Helix 14	AB5	C	28	32	Right-handed 310
Helix 15	AB6	C	73	75	Right-handed 310
Helix 16	AB7	C	86	90	Right-handed 310
Helix 17	AB8	C	100	102	Right-handed 310
Helix 18	AB9	C	215	219	Right-handed 310
Helix 19	AC1	D	337	343	Right-handed alpha
Helix 20	AC2	D	349	353	Right-handed 310
Helix 21	AC3	D	364	370	Right-handed alpha
Helix 22	AC4	D	383	390	Right-handed 310
Helix 23	AC5	D	405	410	Right-handed 310
Helix 24	AC6	D	416	422	Right-handed alpha
Helix 25	AC7	D	438	443	Right-handed alpha
Helix 26	AC8	D	502	505	Right-handed 310

There are 19 sheets in PDB entry 8BG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	111	115	parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	111	115	parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	104	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	198	201	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	239	243	parallel
Strand 3	A	221	226	anti-parallel
Strand 4	A	169	174	anti-parallel
Strand 5	A	181	185	anti-parallel
Strand 6	A	189	190	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	239	243	parallel
Strand 3	A	221	226	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	111	115	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	111	115	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	104	107	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	155	161	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	198	202	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	239	242	parallel
Strand 3	C	220	226	anti-parallel
Strand 4	C	169	174	anti-parallel
Strand 5	C	181	185	anti-parallel
Strand 6	C	189	190	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	380	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	524	525	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BG4