Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BGM entry

There are 4 chains in PDB entry 8BGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 9	ILE 147
B	ARG 5	THR 490
C	GLU 11	ILE 147
D	ARG 5	THR 490

There are 28 helices in PDB entry 8BGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	138	Right-handed alpha
Helix 2	AA2	A	140	145	Right-handed alpha
Helix 3	AA3	B	20	31	Right-handed alpha
Helix 4	AA4	B	159	179	Right-handed alpha
Helix 5	AA5	B	180	182	Right-handed 310
Helix 6	AA6	B	259	267	Right-handed alpha
Helix 7	AA7	B	268	270	Right-handed 310
Helix 8	AA8	B	271	276	Right-handed alpha
Helix 9	AA9	B	280	282	Right-handed 310
Helix 10	AB1	B	396	433	Right-handed alpha
Helix 11	AB2	B	438	444	Right-handed alpha
Helix 12	AB3	B	453	459	Right-handed alpha
Helix 13	AB4	B	460	462	Right-handed 310
Helix 14	AB5	C	79	83	Right-handed 310
Helix 15	AB6	C	122	138	Right-handed alpha
Helix 16	AB7	C	140	145	Right-handed alpha
Helix 17	AB8	D	20	31	Right-handed alpha
Helix 18	AB9	D	159	179	Right-handed alpha
Helix 19	AC1	D	180	182	Right-handed 310
Helix 20	AC2	D	219	222	Right-handed 310
Helix 21	AC3	D	259	267	Right-handed alpha
Helix 22	AC4	D	268	270	Right-handed 310
Helix 23	AC5	D	271	276	Right-handed alpha
Helix 24	AC6	D	280	282	Right-handed 310
Helix 25	AC7	D	396	433	Right-handed alpha
Helix 26	AC8	D	438	444	Right-handed alpha
Helix 27	AC9	D	453	459	Right-handed alpha
Helix 28	AD1	D	460	462	Right-handed 310

There are 10 sheets in PDB entry 8BGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	18	first strand
Strand 2	A	21	31	anti-parallel
Strand 3	A	40	55	anti-parallel
Strand 4	A	61	66	anti-parallel
Strand 5	A	71	77	anti-parallel
Strand 6	A	94	97	parallel
Strand 7	A	109	112	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	214	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	14	19	anti-parallel
Strand 4	B	254	258	anti-parallel
Strand 5	B	483	489	anti-parallel
Strand 6	B	472	479	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	55	61	first strand
Strand 4	B	64	78	anti-parallel
Strand 5	B	88	107	anti-parallel
Strand 6	B	117	124	anti-parallel
Strand 7	B	137	145	anti-parallel
Strand 8	B	148	151	anti-parallel
Strand 9	B	187	192	anti-parallel
Strand 10	B	464	466	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	299	302	anti-parallel
Strand 3	B	308	309	first strand
Strand 4	B	323	332	anti-parallel
Strand 5	B	335	346	anti-parallel
Strand 6	B	350	366	anti-parallel
Strand 7	B	372	390	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	319	320	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	18	first strand
Strand 2	C	21	31	anti-parallel
Strand 3	C	40	55	anti-parallel
Strand 4	C	61	66	anti-parallel
Strand 5	C	71	77	anti-parallel
Strand 6	C	94	97	parallel
Strand 7	C	109	112	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	214	first strand
Strand 2	D	224	231	anti-parallel
Strand 3	D	14	19	anti-parallel
Strand 4	D	254	258	anti-parallel
Strand 5	D	483	489	anti-parallel
Strand 6	D	472	479	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	55	61	first strand
Strand 4	D	64	78	anti-parallel
Strand 5	D	88	107	anti-parallel
Strand 6	D	117	124	anti-parallel
Strand 7	D	137	145	anti-parallel
Strand 8	D	148	151	anti-parallel
Strand 9	D	187	192	anti-parallel
Strand 10	D	464	466	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	299	302	anti-parallel
Strand 3	D	308	309	first strand
Strand 4	D	323	332	anti-parallel
Strand 5	D	335	346	anti-parallel
Strand 6	D	350	366	anti-parallel
Strand 7	D	372	390	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	318	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGM