Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BGP entry

There are 6 chains in PDB entry 8BGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 267
B
 PHE 2ILE 267
C
 MET 1ILE 267
D
 MET 1ILE 267
E
 MET 1ILE 267
F
 PHE 2ILE 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8BGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
7 18Right-handed alpha
Helix 3
AA3
A
42 58Right-handed alpha
Helix 4
AA4
A
80 99Right-handed alpha
Helix 5
AA5
A
117 132Right-handed alpha
Helix 6
AA6
A
148 165Right-handed alpha
Helix 7
AA7
A
172 177Right-handed alpha
Helix 8
AA8
A
204 214Right-handed alpha
Helix 9
AA9
A
220 243Right-handed alpha
Helix 10
AB1
A
254 259Right-handed 310
Helix 11
AB2
A
263 267Right-handed 310
Helix 12
AB3
B
7 18Right-handed alpha
Helix 13
AB4
B
42 58Right-handed alpha
Helix 14
AB5
B
80 99Right-handed alpha
Helix 15
AB6
B
117 132Right-handed alpha
Helix 16
AB7
B
148 165Right-handed alpha
Helix 17
AB8
B
172 177Right-handed alpha
Helix 18
AB9
B
204 214Right-handed alpha
Helix 19
AC1
B
220 243Right-handed alpha
Helix 20
AC2
B
254 259Right-handed 310
Helix 21
AC3
B
263 267Right-handed 310
Helix 22
AC4
C
1 5Right-handed 310
Helix 23
AC5
C
7 18Right-handed alpha
Helix 24
AC6
C
42 58Right-handed alpha
Helix 25
AC7
C
80 99Right-handed alpha
Helix 26
AC8
C
117 132Right-handed alpha
Helix 27
AC9
C
148 165Right-handed alpha
Helix 28
AD1
C
172 177Right-handed alpha
Helix 29
AD2
C
204 214Right-handed alpha
Helix 30
AD3
C
215 219Right-handed 310
Helix 31
AD4
C
220 243Right-handed alpha
Helix 32
AD5
C
254 259Right-handed 310
Helix 33
AD6
C
263 267Right-handed 310
Helix 34
AD7
D
7 18Right-handed alpha
Helix 35
AD8
D
42 58Right-handed alpha
Helix 36
AD9
D
80 99Right-handed alpha
Helix 37
AE1
D
117 132Right-handed alpha
Helix 38
AE2
D
148 165Right-handed alpha
Helix 39
AE3
D
172 177Right-handed alpha
Helix 40
AE4
D
204 214Right-handed alpha
Helix 41
AE5
D
215 219Right-handed 310
Helix 42
AE6
D
220 243Right-handed alpha
Helix 43
AE7
D
254 259Right-handed 310
Helix 44
AE8
D
263 267Right-handed 310
Helix 45
AE9
E
1 5Right-handed 310
Helix 46
AF1
E
7 18Right-handed alpha
Helix 47
AF2
E
42 58Right-handed alpha
Helix 48
AF3
E
80 99Right-handed alpha
Helix 49
AF4
E
117 132Right-handed alpha
Helix 50
AF5
E
148 165Right-handed alpha
Helix 51
AF6
E
172 177Right-handed alpha
Helix 52
AF7
E
204 214Right-handed alpha
Helix 53
AF8
E
220 243Right-handed alpha
Helix 54
AF9
E
254 259Right-handed 310
Helix 55
AG1
E
263 267Right-handed 310
Helix 56
AG2
F
7 18Right-handed alpha
Helix 57
AG3
F
42 58Right-handed alpha
Helix 58
AG4
F
80 99Right-handed alpha
Helix 59
AG5
F
117 132Right-handed alpha
Helix 60
AG6
F
148 165Right-handed alpha
Helix 61
AG7
F
172 177Right-handed alpha
Helix 62
AG8
F
204 214Right-handed alpha
Helix 63
AG9
F
220 243Right-handed alpha
Helix 64
AH1
F
254 259Right-handed 310
Helix 65
AH2
F
263 267Right-handed 310
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There are 8 sheets in PDB entry 8BGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
61 68parallel
Strand 3
A
33 38parallel
Strand 4
A
135 139parallel
Strand 5
A
186 190parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
247 250anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
61 68parallel
Strand 3
B
33 38parallel
Strand 4
B
135 139parallel
Strand 5
B
186 190parallel
Strand 6
B
247 252anti-parallel
Strand 7
B
197 200anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 109first strand
Strand 2
C
61 68parallel
Strand 3
C
33 38parallel
Strand 4
C
135 139parallel
Strand 5
C
186 190parallel
Strand 6
C
247 252anti-parallel
Strand 7
C
197 200anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 109first strand
Strand 2
D
61 68parallel
Strand 3
D
33 38parallel
Strand 4
D
135 139parallel
Strand 5
D
186 190parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 200first strand
Strand 2
D
247 250anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 109first strand
Strand 2
E
61 68parallel
Strand 3
E
33 38parallel
Strand 4
E
135 139parallel
Strand 5
E
186 190parallel
Strand 6
E
247 252anti-parallel
Strand 7
E
197 200anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
104 109first strand
Strand 2
F
61 68parallel
Strand 3
F
33 38parallel
Strand 4
F
135 139parallel
Strand 5
F
186 190parallel
Strand 6
F
247 252anti-parallel
Strand 7
F
197 200anti-parallel
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