Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BGU entry

There are 4 chains in PDB entry 8BGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 GLU 293LYS 334
3
 G 1 U 121
A
 TYR 44SER 272
B
 GLN 3LYS 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8BGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
298 302Right-handed 310
Helix 2
AA2
A
81 86Right-handed 310
Helix 3
AA3
A
94 114Right-handed alpha
Helix 4
AA4
A
157 170Right-handed alpha
Helix 5
AA5
A
192 200Right-handed alpha
Helix 6
AA6
A
201 215Right-handed alpha
Helix 7
AA7
A
216 223Right-handed alpha
Helix 8
AA8
A
223 228Right-handed alpha
Helix 9
AA9
A
235 250Right-handed alpha
Helix 10
AB1
B
9 14Right-handed alpha
Helix 11
AB2
B
30 45Right-handed alpha
Helix 12
AB3
B
76 90Right-handed alpha
Helix 13
AB4
B
138 144Right-handed 310
Helix 14
AB5
B
158 170Right-handed alpha
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There are 5 sheets in PDB entry 8BGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
303 304first strand
Strand 2
F
311 312anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
144 147parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
189 190anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
128 135anti-parallel
Strand 3
B
104 109anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
69 71anti-parallel
Strand 3
B
49 51anti-parallel
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