Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BGW entry

There are 2 chains in PDB entry 8BGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 750
B	MET 1	ALA 750

There are 80 helices in PDB entry 8BGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	32	Right-handed alpha
Helix 2	AA2	A	51	64	Right-handed alpha
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	82	105	Right-handed alpha
Helix 5	AA5	A	107	111	Right-handed 310
Helix 6	AA6	A	112	129	Right-handed alpha
Helix 7	AA7	A	142	160	Right-handed alpha
Helix 8	AA8	A	163	165	Right-handed 310
Helix 9	AA9	A	166	174	Right-handed alpha
Helix 10	AB1	A	182	202	Right-handed alpha
Helix 11	AB2	A	218	222	Right-handed 310
Helix 12	AB3	A	226	255	Right-handed alpha
Helix 13	AB4	A	268	272	Right-handed 310
Helix 14	AB5	A	276	281	Right-handed alpha
Helix 15	AB6	A	282	307	Right-handed alpha
Helix 16	AB7	A	319	321	Right-handed 310
Helix 17	AB8	A	323	355	Right-handed alpha
Helix 18	AB9	A	362	390	Right-handed alpha
Helix 19	AC1	A	397	402	Right-handed alpha
Helix 20	AC2	A	412	440	Right-handed alpha
Helix 21	AC3	A	445	462	Right-handed alpha
Helix 22	AC4	A	463	468	Right-handed 310
Helix 23	AC5	A	473	487	Right-handed alpha
Helix 24	AC6	A	491	508	Right-handed alpha
Helix 25	AC7	A	513	532	Right-handed alpha
Helix 26	AC8	A	533	539	Right-handed 310
Helix 27	AC9	A	545	565	Right-handed alpha
Helix 28	AD1	A	565	576	Right-handed alpha
Helix 29	AD2	A	577	579	Right-handed 310
Helix 30	AD3	A	580	585	Right-handed 310
Helix 31	AD4	A	586	603	Right-handed alpha
Helix 32	AD5	A	605	611	Right-handed alpha
Helix 33	AD6	A	613	621	Right-handed alpha
Helix 34	AD7	A	624	654	Right-handed alpha
Helix 35	AD8	A	660	682	Right-handed alpha
Helix 36	AD9	A	682	697	Right-handed alpha
Helix 37	AE1	A	698	703	Right-handed alpha
Helix 38	AE2	A	704	709	Right-handed alpha
Helix 39	AE3	A	710	719	Right-handed alpha
Helix 40	AE4	A	719	744	Right-handed alpha
Helix 41	AE5	B	4	32	Right-handed alpha
Helix 42	AE6	B	51	64	Right-handed alpha
Helix 43	AE7	B	65	69	Right-handed 310
Helix 44	AE8	B	82	105	Right-handed alpha
Helix 45	AE9	B	107	111	Right-handed 310
Helix 46	AF1	B	112	129	Right-handed alpha
Helix 47	AF2	B	142	160	Right-handed alpha
Helix 48	AF3	B	163	165	Right-handed 310
Helix 49	AF4	B	166	174	Right-handed alpha
Helix 50	AF5	B	182	202	Right-handed alpha
Helix 51	AF6	B	218	222	Right-handed 310
Helix 52	AF7	B	226	255	Right-handed alpha
Helix 53	AF8	B	268	272	Right-handed 310
Helix 54	AF9	B	276	281	Right-handed alpha
Helix 55	AG1	B	282	307	Right-handed alpha
Helix 56	AG2	B	319	321	Right-handed 310
Helix 57	AG3	B	323	355	Right-handed alpha
Helix 58	AG4	B	362	390	Right-handed alpha
Helix 59	AG5	B	397	402	Right-handed alpha
Helix 60	AG6	B	412	440	Right-handed alpha
Helix 61	AG7	B	445	462	Right-handed alpha
Helix 62	AG8	B	463	468	Right-handed 310
Helix 63	AG9	B	473	487	Right-handed alpha
Helix 64	AH1	B	491	508	Right-handed alpha
Helix 65	AH2	B	513	532	Right-handed alpha
Helix 66	AH3	B	533	539	Right-handed 310
Helix 67	AH4	B	545	565	Right-handed alpha
Helix 68	AH5	B	565	576	Right-handed alpha
Helix 69	AH6	B	577	579	Right-handed 310
Helix 70	AH7	B	580	585	Right-handed 310
Helix 71	AH8	B	586	603	Right-handed alpha
Helix 72	AH9	B	605	611	Right-handed alpha
Helix 73	AI1	B	613	621	Right-handed alpha
Helix 74	AI2	B	624	654	Right-handed alpha
Helix 75	AI3	B	660	682	Right-handed alpha
Helix 76	AI4	B	682	697	Right-handed alpha
Helix 77	AI5	B	698	703	Right-handed alpha
Helix 78	AI6	B	704	709	Right-handed alpha
Helix 79	AI7	B	710	719	Right-handed alpha
Helix 80	AI8	B	719	744	Right-handed alpha

There are 6 sheets in PDB entry 8BGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	39	42	anti-parallel
Strand 3	A	138	141	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	313	first strand
Strand 2	A	316	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	138	141	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	316	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGW