Analysis of interatomic Contacts of Structural Units in PDB entry:
8BGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BGX entry

There are 4 chains in PDB entry 8BGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 318
B
 SER 0LYS 318
C
 SER 0LYS 318
D
 SER 0ASP 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8BGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 7Right-handed alpha
Helix 2
AA2
A
8 21Right-handed alpha
Helix 3
AA3
A
22 31Right-handed 310
Helix 4
AA4
A
34 43Right-handed alpha
Helix 5
AA5
A
45 59Right-handed alpha
Helix 6
AA6
A
73 80Right-handed 310
Helix 7
AA7
A
83 93Right-handed alpha
Helix 8
AA8
A
94 103Right-handed alpha
Helix 9
AA9
A
103 108Right-handed alpha
Helix 10
AB1
A
115 122Right-handed alpha
Helix 11
AB2
A
124 130Right-handed alpha
Helix 12
AB3
A
132 158Right-handed alpha
Helix 13
AB4
A
159 163Right-handed 310
Helix 14
AB5
A
174 182Right-handed alpha
Helix 15
AB6
A
227 231Right-handed 310
Helix 16
AB7
A
232 247Right-handed alpha
Helix 17
AB8
A
266 277Right-handed alpha
Helix 18
AB9
A
282 293Right-handed alpha
Helix 19
AC1
B
1 7Right-handed alpha
Helix 20
AC2
B
8 21Right-handed alpha
Helix 21
AC3
B
23 31Right-handed 310
Helix 22
AC4
B
34 43Right-handed alpha
Helix 23
AC5
B
45 59Right-handed alpha
Helix 24
AC6
B
73 80Right-handed 310
Helix 25
AC7
B
83 93Right-handed alpha
Helix 26
AC8
B
94 108Right-handed alpha
Helix 27
AC9
B
115 122Right-handed alpha
Helix 28
AD1
B
124 130Right-handed alpha
Helix 29
AD2
B
132 158Right-handed alpha
Helix 30
AD3
B
174 184Right-handed alpha
Helix 31
AD4
B
227 231Right-handed 310
Helix 32
AD5
B
232 247Right-handed alpha
Helix 33
AD6
B
266 277Right-handed alpha
Helix 34
AD7
B
282 293Right-handed alpha
Helix 35
AD8
C
1 7Right-handed alpha
Helix 36
AD9
C
8 21Right-handed alpha
Helix 37
AE1
C
22 31Right-handed 310
Helix 38
AE2
C
34 43Right-handed alpha
Helix 39
AE3
C
45 59Right-handed alpha
Helix 40
AE4
C
73 80Right-handed 310
Helix 41
AE5
C
83 93Right-handed alpha
Helix 42
AE6
C
94 102Right-handed alpha
Helix 43
AE7
C
103 108Right-handed alpha
Helix 44
AE8
C
115 122Right-handed alpha
Helix 45
AE9
C
124 130Right-handed alpha
Helix 46
AF1
C
132 158Right-handed alpha
Helix 47
AF2
C
174 184Right-handed alpha
Helix 48
AF3
C
227 231Right-handed 310
Helix 49
AF4
C
232 247Right-handed alpha
Helix 50
AF5
C
266 277Right-handed alpha
Helix 51
AF6
C
282 293Right-handed alpha
Helix 52
AF7
D
1 7Right-handed alpha
Helix 53
AF8
D
8 21Right-handed alpha
Helix 54
AF9
D
22 31Right-handed 310
Helix 55
AG1
D
34 43Right-handed alpha
Helix 56
AG2
D
45 59Right-handed alpha
Helix 57
AG3
D
73 80Right-handed 310
Helix 58
AG4
D
83 93Right-handed alpha
Helix 59
AG5
D
94 102Right-handed alpha
Helix 60
AG6
D
103 108Right-handed alpha
Helix 61
AG7
D
115 122Right-handed alpha
Helix 62
AG8
D
124 130Right-handed alpha
Helix 63
AG9
D
132 158Right-handed alpha
Helix 64
AH1
D
159 163Right-handed 310
Helix 65
AH2
D
174 184Right-handed alpha
Helix 66
AH3
D
227 231Right-handed 310
Helix 67
AH4
D
232 247Right-handed alpha
Helix 68
AH5
D
266 277Right-handed alpha
Helix 69
AH6
D
282 293Right-handed alpha
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There are 8 sheets in PDB entry 8BGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
68 71anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
188 193parallel
Strand 3
A
165 169parallel
Strand 4
A
221 225parallel
Strand 5
A
252 258parallel
Strand 6
A
309 317anti-parallel
Strand 7
A
295 304anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
68 71anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
188 193parallel
Strand 3
B
165 169parallel
Strand 4
B
221 225parallel
Strand 5
B
252 258parallel
Strand 6
B
309 317anti-parallel
Strand 7
B
295 304anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 65first strand
Strand 2
C
68 71anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 208first strand
Strand 2
C
188 193parallel
Strand 3
C
165 169parallel
Strand 4
C
221 225parallel
Strand 5
C
252 258parallel
Strand 6
C
309 317anti-parallel
Strand 7
C
295 304anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 65first strand
Strand 2
D
68 71anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 208first strand
Strand 2
D
188 193parallel
Strand 3
D
165 169parallel
Strand 4
D
221 225parallel
Strand 5
D
252 258parallel
Strand 6
D
309 317anti-parallel
Strand 7
D
295 304anti-parallel
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