Analysis of interatomic Contacts of Structural Units in PDB entry:
8BHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BHD entry

There are 5 chains in PDB entry 8BHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LYS 227
B
 SER 6LYS 227
C
 LYS 7LYS 227
D
 ILE 8LYS 225
E
 ILE 8VAL 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8BHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
87 100Right-handed alpha
Helix 3
AA3
A
117 134Right-handed alpha
Helix 4
AA4
A
142 154Right-handed alpha
Helix 5
AA5
A
166 176Right-handed alpha
Helix 6
AA6
A
176 181Right-handed alpha
Helix 7
AA7
A
184 187Right-handed 310
Helix 8
AA8
A
188 194Right-handed alpha
Helix 9
AA9
A
194 208Right-handed alpha
Helix 10
AB1
A
208 213Right-handed alpha
Helix 11
AB2
A
217 227Right-handed alpha
Helix 12
AB3
B
17 38Right-handed alpha
Helix 13
AB4
B
87 100Right-handed alpha
Helix 14
AB5
B
117 135Right-handed alpha
Helix 15
AB6
B
142 157Right-handed alpha
Helix 16
AB7
B
166 176Right-handed alpha
Helix 17
AB8
B
176 181Right-handed alpha
Helix 18
AB9
B
184 187Right-handed 310
Helix 19
AC1
B
188 194Right-handed alpha
Helix 20
AC2
B
194 208Right-handed alpha
Helix 21
AC3
B
208 213Right-handed alpha
Helix 22
AC4
B
216 227Right-handed alpha
Helix 23
AC5
C
17 35Right-handed alpha
Helix 24
AC6
C
87 100Right-handed alpha
Helix 25
AC7
C
117 135Right-handed alpha
Helix 26
AC8
C
142 154Right-handed alpha
Helix 27
AC9
C
166 176Right-handed alpha
Helix 28
AD1
C
176 181Right-handed alpha
Helix 29
AD2
C
184 187Right-handed 310
Helix 30
AD3
C
188 194Right-handed alpha
Helix 31
AD4
C
194 208Right-handed alpha
Helix 32
AD5
C
208 213Right-handed alpha
Helix 33
AD6
C
217 226Right-handed alpha
Helix 34
AD7
D
17 35Right-handed alpha
Helix 35
AD8
D
87 100Right-handed alpha
Helix 36
AD9
D
117 134Right-handed alpha
Helix 37
AE1
D
142 154Right-handed alpha
Helix 38
AE2
D
166 176Right-handed alpha
Helix 39
AE3
D
176 181Right-handed alpha
Helix 40
AE4
D
184 187Right-handed 310
Helix 41
AE5
D
188 194Right-handed alpha
Helix 42
AE6
D
194 213Right-handed alpha
Helix 43
AE7
D
217 225Right-handed alpha
Helix 44
AE8
E
17 35Right-handed alpha
Helix 45
AE9
E
87 100Right-handed alpha
Helix 46
AF1
E
116 134Right-handed alpha
Helix 47
AF2
E
142 156Right-handed alpha
Helix 48
AF3
E
166 176Right-handed alpha
Helix 49
AF4
E
176 181Right-handed alpha
Helix 50
AF5
E
184 187Right-handed 310
Helix 51
AF6
E
188 194Right-handed alpha
Helix 52
AF7
E
194 213Right-handed alpha
Helix 53
AF8
E
217 224Right-handed alpha
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There are 5 sheets in PDB entry 8BHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
7 12parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
83 86anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
7 12parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
83 86anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 53first strand
Strand 2
C
8 12parallel
Strand 3
C
61 65anti-parallel
Strand 4
C
83 86anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
9 12parallel
Strand 3
D
61 64anti-parallel
Strand 4
D
84 86anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 53first strand
Strand 2
E
9 12parallel
Strand 3
E
61 64anti-parallel
Strand 4
E
83 86anti-parallel
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