Analysis of interatomic Contacts of Structural Units in PDB entry:
8BI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BI4 entry

There are 6 chains in PDB entry 8BI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	VAL 147
B	ALA 1	VAL 147
C	ALA 1	VAL 147
D	ALA 1	VAL 147
E	ALA 1	VAL 147
F	ALA 1	VAL 147

There are 21 helices in PDB entry 8BI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	81	Right-handed 310
Helix 2	AA2	A	104	111	Right-handed alpha
Helix 3	AA3	B	33	37	Right-handed 310
Helix 4	AA4	B	73	81	Right-handed 310
Helix 5	AA5	B	106	111	Right-handed alpha
Helix 6	AA6	C	33	37	Right-handed 310
Helix 7	AA7	C	73	80	Right-handed 310
Helix 8	AA8	C	97	101	Right-handed 310
Helix 9	AA9	C	104	111	Right-handed alpha
Helix 10	AB1	D	73	75	Right-handed 310
Helix 11	AB2	D	76	81	Right-handed alpha
Helix 12	AB3	D	97	101	Right-handed 310
Helix 13	AB4	D	104	111	Right-handed alpha
Helix 14	AB5	E	33	37	Right-handed 310
Helix 15	AB6	E	73	80	Right-handed 310
Helix 16	AB7	E	97	101	Right-handed 310
Helix 17	AB8	E	104	111	Right-handed alpha
Helix 18	AB9	F	33	37	Right-handed 310
Helix 19	AC1	F	73	81	Right-handed 310
Helix 20	AC2	F	97	101	Right-handed 310
Helix 21	AC3	F	104	111	Right-handed alpha

There are 15 sheets in PDB entry 8BI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	16	first strand
Strand 2	A	127	136	anti-parallel
Strand 3	A	46	55	anti-parallel
Strand 4	A	93	96	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	112	118	anti-parallel
Strand 3	A	63	69	anti-parallel
Strand 4	A	85	86	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	94	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	112	118	anti-parallel
Strand 3	B	63	69	anti-parallel
Strand 4	B	85	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	127	128	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	16	first strand
Strand 2	C	127	136	anti-parallel
Strand 3	C	54	55	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	16	first strand
Strand 2	C	127	136	anti-parallel
Strand 3	C	46	51	anti-parallel
Strand 4	C	94	95	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	112	118	anti-parallel
Strand 3	C	63	69	anti-parallel
Strand 4	C	85	86	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	16	first strand
Strand 2	D	127	136	anti-parallel
Strand 3	D	46	55	anti-parallel
Strand 4	D	93	95	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	112	118	anti-parallel
Strand 3	D	63	69	anti-parallel
Strand 4	D	85	86	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	15	first strand
Strand 2	E	127	136	anti-parallel
Strand 3	E	46	55	anti-parallel
Strand 4	E	93	95	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	28	first strand
Strand 2	E	112	118	anti-parallel
Strand 3	E	63	69	anti-parallel
Strand 4	E	85	86	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	13	first strand
Strand 2	F	131	136	anti-parallel
Strand 3	F	46	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	28	first strand
Strand 2	F	112	118	anti-parallel
Strand 3	F	63	69	anti-parallel
Strand 4	F	85	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	127	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BI4