Analysis of interatomic Contacts of Structural Units in PDB entry:
8BII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BII entry

There are 4 chains in PDB entry 8BII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	LYS 317
B	SER 0	LYS 317
C	SER 0	LYS 317
D	SER 0	ASP 290

There are137 helices in PDB entry 8BII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	8	Right-handed alpha
Helix 2	AA2	A	8	21	Right-handed alpha
Helix 3	AA3	A	23	31	Right-handed 310
Helix 4	AA4	A	34	42	Right-handed alpha
Helix 5	AA5	A	45	59	Right-handed alpha
Helix 6	AA6	A	73	79	Right-handed 310
Helix 7	AA7	A	83	93	Right-handed alpha
Helix 8	AA8	A	94	110	Right-handed alpha
Helix 9	AA9	A	115	122	Right-handed alpha
Helix 10	AB1	A	124	132	Right-handed alpha
Helix 11	AB2	A	132	149	Right-handed alpha
Helix 12	AB3	A	150	158	Right-handed alpha
Helix 13	AB4	A	174	184	Right-handed alpha
Helix 14	AB5	A	227	231	Right-handed 310
Helix 15	AB6	A	232	247	Right-handed alpha
Helix 16	AB7	A	264	279	Right-handed alpha
Helix 17	AB8	A	284	295	Right-handed alpha
Helix 18	AB9	B	1	8	Right-handed alpha
Helix 19	AC1	B	8	21	Right-handed alpha
Helix 20	AC2	B	23	31	Right-handed 310
Helix 21	AC3	B	34	43	Right-handed alpha
Helix 22	AC4	B	45	59	Right-handed alpha
Helix 23	AC5	B	73	79	Right-handed 310
Helix 24	AC6	B	83	93	Right-handed alpha
Helix 25	AC7	B	94	110	Right-handed alpha
Helix 26	AC8	B	115	122	Right-handed alpha
Helix 27	AC9	B	124	130	Right-handed alpha
Helix 28	AD1	B	132	149	Right-handed alpha
Helix 29	AD2	B	150	158	Right-handed alpha
Helix 30	AD3	B	174	184	Right-handed alpha
Helix 31	AD4	B	227	231	Right-handed 310
Helix 32	AD5	B	232	247	Right-handed alpha
Helix 33	AD6	B	264	279	Right-handed alpha
Helix 34	AD7	B	284	295	Right-handed alpha
Helix 35	AD8	C	1	8	Right-handed alpha
Helix 36	AD9	C	8	21	Right-handed alpha
Helix 37	AE1	C	23	31	Right-handed 310
Helix 38	AE2	C	34	42	Right-handed alpha
Helix 39	AE3	C	45	59	Right-handed alpha
Helix 40	AE4	C	73	79	Right-handed 310
Helix 41	AE5	C	83	93	Right-handed alpha
Helix 42	AE6	C	94	102	Right-handed alpha
Helix 43	AE7	C	103	110	Right-handed alpha
Helix 44	AE8	C	115	122	Right-handed alpha
Helix 45	AE9	C	124	132	Right-handed alpha
Helix 46	AF1	C	132	158	Right-handed alpha
Helix 47	AF2	C	174	184	Right-handed alpha
Helix 48	AF3	C	227	231	Right-handed 310
Helix 49	AF4	C	232	247	Right-handed alpha
Helix 50	AF5	C	264	279	Right-handed alpha
Helix 51	AF6	C	284	296	Right-handed alpha
Helix 52	AF7	D	1	7	Right-handed alpha
Helix 53	AF8	D	8	21	Right-handed alpha
Helix 54	AF9	D	23	31	Right-handed 310
Helix 55	AG1	D	34	42	Right-handed alpha
Helix 56	AG2	D	45	59	Right-handed alpha
Helix 57	AG3	D	73	80	Right-handed 310
Helix 58	AG4	D	83	93	Right-handed alpha
Helix 59	AG5	D	94	102	Right-handed alpha
Helix 60	AG6	D	103	110	Right-handed alpha
Helix 61	AG7	D	115	122	Right-handed alpha
Helix 62	AG8	D	124	130	Right-handed alpha
Helix 63	AG9	D	132	149	Right-handed alpha
Helix 64	AH1	D	150	158	Right-handed alpha
Helix 65	AH2	D	159	163	Right-handed 310
Helix 66	AH3	D	174	184	Right-handed alpha
Helix 67	AH4	D	227	231	Right-handed 310
Helix 68	AH5	D	232	247	Right-handed alpha
Helix 69	AH6	D	265	279	Right-handed alpha
Helix 70	AH7	D	284	296	Right-handed alpha
Helix 71	AH8	E	1	8	Right-handed alpha
Helix 72	AH9	E	8	21	Right-handed alpha
Helix 73	AI1	E	23	31	Right-handed 310
Helix 74	AI2	E	34	43	Right-handed alpha
Helix 75	AI3	E	45	59	Right-handed alpha
Helix 76	AI4	E	75	79	Right-handed 310
Helix 77	AI5	E	83	93	Right-handed alpha
Helix 78	AI6	E	94	110	Right-handed alpha
Helix 79	AI7	E	115	122	Right-handed alpha
Helix 80	AI8	E	124	132	Right-handed alpha
Helix 81	AI9	E	132	149	Right-handed alpha
Helix 82	AJ1	E	150	158	Right-handed alpha
Helix 83	AJ2	E	174	184	Right-handed alpha
Helix 84	AJ3	E	227	231	Right-handed 310
Helix 85	AJ4	E	232	247	Right-handed alpha
Helix 86	AJ5	E	264	279	Right-handed alpha
Helix 87	AJ6	E	284	296	Right-handed alpha
Helix 88	AJ7	F	1	7	Right-handed alpha
Helix 89	AJ8	F	8	21	Right-handed alpha
Helix 90	AJ9	F	23	31	Right-handed 310
Helix 91	AK1	F	34	43	Right-handed alpha
Helix 92	AK2	F	45	59	Right-handed alpha
Helix 93	AK3	F	73	79	Right-handed 310
Helix 94	AK4	F	83	93	Right-handed alpha
Helix 95	AK5	F	94	110	Right-handed alpha
Helix 96	AK6	F	115	122	Right-handed alpha
Helix 97	AK7	F	124	132	Right-handed alpha
Helix 98	AK8	F	132	149	Right-handed alpha
Helix 99	AK9	F	150	158	Right-handed alpha
Helix 100	AL1	F	174	184	Right-handed alpha
Helix 101	AL2	F	227	231	Right-handed 310
Helix 102	AL3	F	232	247	Right-handed alpha
Helix 103	AL4	F	264	279	Right-handed alpha
Helix 104	AL5	F	284	296	Right-handed alpha
Helix 105	AL6	G	1	8	Right-handed alpha
Helix 106	AL7	G	8	21	Right-handed alpha
Helix 107	AL8	G	23	31	Right-handed 310
Helix 108	AL9	G	34	43	Right-handed alpha
Helix 109	AM1	G	45	60	Right-handed alpha
Helix 110	AM2	G	73	79	Right-handed 310
Helix 111	AM3	G	83	93	Right-handed alpha
Helix 112	AM4	G	94	110	Right-handed alpha
Helix 113	AM5	G	115	122	Right-handed alpha
Helix 114	AM6	G	124	132	Right-handed alpha
Helix 115	AM7	G	132	158	Right-handed alpha
Helix 116	AM8	G	174	184	Right-handed alpha
Helix 117	AM9	G	227	231	Right-handed 310
Helix 118	AN1	G	232	247	Right-handed alpha
Helix 119	AN2	G	264	279	Right-handed alpha
Helix 120	AN3	G	284	295	Right-handed alpha
Helix 121	AN4	H	1	8	Right-handed alpha
Helix 122	AN5	H	8	21	Right-handed alpha
Helix 123	AN6	H	23	31	Right-handed 310
Helix 124	AN7	H	34	43	Right-handed alpha
Helix 125	AN8	H	45	59	Right-handed alpha
Helix 126	AN9	H	73	79	Right-handed 310
Helix 127	AO1	H	83	93	Right-handed alpha
Helix 128	AO2	H	94	102	Right-handed alpha
Helix 129	AO3	H	103	110	Right-handed alpha
Helix 130	AO4	H	115	122	Right-handed alpha
Helix 131	AO5	H	124	132	Right-handed alpha
Helix 132	AO6	H	132	158	Right-handed alpha
Helix 133	AO7	H	174	184	Right-handed alpha
Helix 134	AO8	H	227	231	Right-handed 310
Helix 135	AO9	H	232	247	Right-handed alpha
Helix 136	AP1	H	264	279	Right-handed alpha
Helix 137	AP2	H	284	296	Right-handed alpha

There are 14 sheets in PDB entry 8BII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	69	71	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	188	192	parallel
Strand 3	A	165	169	parallel
Strand 4	A	221	225	parallel
Strand 5	A	252	258	parallel
Strand 6	A	309	316	anti-parallel
Strand 7	A	297	304	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	68	71	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	188	193	parallel
Strand 3	B	165	169	parallel
Strand 4	B	221	225	parallel
Strand 5	B	252	258	parallel
Strand 6	B	309	316	anti-parallel
Strand 7	B	297	304	anti-parallel
Strand 8	C	297	304	anti-parallel
Strand 9	C	309	316	anti-parallel
Strand 10	C	252	258	anti-parallel
Strand 11	C	221	225	parallel
Strand 12	C	165	169	parallel
Strand 13	C	188	192	parallel
Strand 14	C	204	207	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	69	71	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	69	71	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	208	first strand
Strand 2	D	188	193	parallel
Strand 3	D	165	169	parallel
Strand 4	D	221	223	parallel
Strand 5	D	252	258	parallel
Strand 6	D	309	316	anti-parallel
Strand 7	D	297	304	anti-parallel
Strand 8	F	298	303	anti-parallel
Strand 9	F	309	315	anti-parallel
Strand 10	F	252	258	anti-parallel
Strand 11	F	221	223	parallel
Strand 12	F	165	169	parallel
Strand 13	F	188	193	parallel
Strand 14	F	204	208	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	69	71	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	208	first strand
Strand 2	E	188	193	parallel
Strand 3	E	165	169	parallel
Strand 4	E	221	223	parallel
Strand 5	E	252	258	parallel
Strand 6	E	309	316	anti-parallel
Strand 7	E	297	304	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	64	first strand
Strand 2	F	69	71	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	69	71	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	208	first strand
Strand 2	G	188	193	parallel
Strand 3	G	165	169	parallel
Strand 4	G	221	225	parallel
Strand 5	G	252	258	parallel
Strand 6	G	309	316	anti-parallel
Strand 7	G	297	304	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	69	71	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	205	208	first strand
Strand 2	H	188	193	parallel
Strand 3	H	165	169	parallel
Strand 4	H	221	225	parallel
Strand 5	H	252	258	parallel
Strand 6	H	309	315	anti-parallel
Strand 7	H	298	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BII

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BII