Analysis of interatomic Contacts of Structural Units in PDB entry:
8BIK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BIK entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8BIK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	ALA 551
B	ALA 77	ARG 107
B	HIS 109	ILE 270
C	ASN 25	LEU 324
D	GLY 9	ILE 333

There are 83 helices in PDB entry 8BIK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	56	Right-handed alpha
Helix 2	AA2	A	57	71	Right-handed alpha
Helix 3	AA3	A	100	108	Right-handed alpha
Helix 4	AA4	A	112	133	Right-handed alpha
Helix 5	AA5	A	176	180	Right-handed 310
Helix 6	AA6	A	181	186	Right-handed alpha
Helix 7	AA7	A	192	210	Right-handed alpha
Helix 8	AA8	A	218	229	Right-handed alpha
Helix 9	AA9	A	238	249	Right-handed alpha
Helix 10	AB1	A	258	265	Right-handed alpha
Helix 11	AB2	A	265	270	Right-handed alpha
Helix 12	AB3	A	282	287	Right-handed alpha
Helix 13	AB4	A	289	300	Right-handed alpha
Helix 14	AB5	A	303	313	Right-handed alpha
Helix 15	AB6	A	318	336	Right-handed alpha
Helix 16	AB7	A	337	342	Right-handed alpha
Helix 17	AB8	A	411	426	Right-handed alpha
Helix 18	AB9	A	534	550	Right-handed alpha
Helix 19	AC1	B	97	99	Right-handed 310
Helix 20	AC2	B	156	160	Right-handed 310
Helix 21	AC3	B	161	180	Right-handed alpha
Helix 22	AC4	B	207	212	Right-handed 310
Helix 23	AC5	B	232	236	Right-handed 310
Helix 24	AC6	C	27	36	Right-handed alpha
Helix 25	AC7	C	37	42	Right-handed 310
Helix 26	AC8	C	56	67	Right-handed alpha
Helix 27	AC9	C	87	99	Right-handed alpha
Helix 28	AD1	C	106	112	Right-handed alpha
Helix 29	AD2	C	113	122	Right-handed alpha
Helix 30	AD3	C	137	148	Right-handed alpha
Helix 31	AD4	C	168	179	Right-handed alpha
Helix 32	AD5	C	180	183	Right-handed 310
Helix 33	AD6	C	186	191	Right-handed 310
Helix 34	AD7	C	192	197	Right-handed alpha
Helix 35	AD8	C	212	224	Right-handed alpha
Helix 36	AD9	C	243	247	Right-handed alpha
Helix 37	AE1	C	247	252	Right-handed alpha
Helix 38	AE2	C	261	267	Right-handed alpha
Helix 39	AE3	C	268	270	Right-handed 310
Helix 40	AE4	C	284	296	Right-handed alpha
Helix 41	AE5	C	315	323	Right-handed alpha
Helix 42	AE6	D	49	56	Right-handed alpha
Helix 43	AE7	D	57	71	Right-handed alpha
Helix 44	AE8	D	100	108	Right-handed alpha
Helix 45	AE9	D	112	133	Right-handed alpha
Helix 46	AF1	D	157	161	Right-handed 310
Helix 47	AF2	D	176	180	Right-handed 310
Helix 48	AF3	D	181	186	Right-handed alpha
Helix 49	AF4	D	192	210	Right-handed alpha
Helix 50	AF5	D	218	229	Right-handed alpha
Helix 51	AF6	D	238	249	Right-handed alpha
Helix 52	AF7	D	258	265	Right-handed alpha
Helix 53	AF8	D	265	270	Right-handed alpha
Helix 54	AF9	D	282	287	Right-handed alpha
Helix 55	AG1	D	289	300	Right-handed alpha
Helix 56	AG2	D	306	312	Right-handed alpha
Helix 57	AG3	D	318	336	Right-handed alpha
Helix 58	AG4	D	337	342	Right-handed alpha
Helix 59	AG5	D	411	426	Right-handed alpha
Helix 60	AG6	D	534	550	Right-handed alpha
Helix 61	AG7	E	97	99	Right-handed 310
Helix 62	AG8	E	156	160	Right-handed 310
Helix 63	AG9	E	161	173	Right-handed alpha
Helix 64	AH1	E	207	212	Right-handed 310
Helix 65	AH2	E	232	236	Right-handed 310
Helix 66	AH3	F	27	36	Right-handed alpha
Helix 67	AH4	F	37	42	Right-handed 310
Helix 68	AH5	F	56	67	Right-handed alpha
Helix 69	AH6	F	87	99	Right-handed alpha
Helix 70	AH7	F	106	112	Right-handed alpha
Helix 71	AH8	F	113	122	Right-handed alpha
Helix 72	AH9	F	137	148	Right-handed alpha
Helix 73	AI1	F	168	179	Right-handed alpha
Helix 74	AI2	F	180	183	Right-handed 310
Helix 75	AI3	F	186	191	Right-handed 310
Helix 76	AI4	F	192	197	Right-handed alpha
Helix 77	AI5	F	212	224	Right-handed alpha
Helix 78	AI6	F	243	247	Right-handed alpha
Helix 79	AI7	F	247	252	Right-handed alpha
Helix 80	AI8	F	261	267	Right-handed alpha
Helix 81	AI9	F	268	270	Right-handed 310
Helix 82	AJ1	F	284	296	Right-handed alpha
Helix 83	AJ2	F	315	323	Right-handed alpha

There are 22 sheets in PDB entry 8BIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	29	35	anti-parallel
Strand 4	A	41	48	anti-parallel
Strand 5	A	88	94	anti-parallel
Strand 6	A	79	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	153	155	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	248	257	anti-parallel
Strand 4	B	260	269	anti-parallel
Strand 5	C	45	52	parallel
Strand 6	C	72	75	parallel
Strand 7	C	82	86	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	408	first strand
Strand 2	A	464	471	anti-parallel
Strand 3	A	450	461	anti-parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	429	434	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	112	117	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	132	134	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	91	95	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	141	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	163	167	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	227	231	parallel
Strand 3	C	237	242	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	299	303	parallel
Strand 3	C	309	314	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	29	35	anti-parallel
Strand 4	D	41	48	anti-parallel
Strand 5	D	88	94	anti-parallel
Strand 6	D	79	84	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	162	163	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	153	155	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	248	257	anti-parallel
Strand 4	E	260	269	anti-parallel
Strand 5	F	45	52	parallel
Strand 6	F	72	75	parallel
Strand 7	F	82	86	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	408	first strand
Strand 2	D	464	471	anti-parallel
Strand 3	D	450	461	anti-parallel
Strand 4	D	437	443	anti-parallel
Strand 5	D	429	434	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	84	first strand
Strand 2	E	112	117	anti-parallel
Strand 3	E	106	107	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	104	first strand
Strand 2	E	91	95	anti-parallel
Strand 3	E	121	129	anti-parallel
Strand 4	E	132	134	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	104	first strand
Strand 2	E	91	95	anti-parallel
Strand 3	E	121	129	anti-parallel
Strand 4	E	149	155	anti-parallel
Strand 5	E	141	143	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	163	167	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	208	first strand
Strand 2	F	227	231	parallel
Strand 3	F	237	242	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	299	303	parallel
Strand 3	F	309	314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BIK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BIK