Analysis of interatomic Contacts of Structural Units in PDB entry:
8BIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BIQ entry

There are 3 chains in PDB entry 8BIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 10	PHE 570
A	THR 9	PHE 570
B	VAL 10	LYS 124

There are 86 helices in PDB entry 8BIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	10	23	Right-handed alpha
Helix 2	AA2	D	25	38	Right-handed alpha
Helix 3	AA3	D	45	50	Right-handed alpha
Helix 4	AA4	D	50	55	Right-handed alpha
Helix 5	AA5	D	55	60	Right-handed alpha
Helix 6	AA6	D	80	97	Right-handed alpha
Helix 7	AA7	D	112	126	Right-handed alpha
Helix 8	AA8	D	137	148	Right-handed alpha
Helix 9	AA9	D	159	168	Right-handed alpha
Helix 10	AB1	D	225	239	Right-handed alpha
Helix 11	AB2	D	254	262	Right-handed alpha
Helix 12	AB3	D	262	268	Right-handed alpha
Helix 13	AB4	D	282	293	Right-handed alpha
Helix 14	AB5	D	301	309	Right-handed alpha
Helix 15	AB6	D	310	311	Right-handed 310
Helix 16	AB7	D	312	316	Right-handed 310
Helix 17	AB8	D	332	344	Right-handed alpha
Helix 18	AB9	D	418	425	Right-handed alpha
Helix 19	AC1	D	463	473	Right-handed alpha
Helix 20	AC2	D	507	522	Right-handed alpha
Helix 21	AC3	D	523	527	Right-handed 310
Helix 22	AC4	D	546	559	Right-handed alpha
Helix 23	AC5	A	10	23	Right-handed alpha
Helix 24	AC6	A	25	38	Right-handed alpha
Helix 25	AC7	A	45	50	Right-handed alpha
Helix 26	AC8	A	54	60	Right-handed alpha
Helix 27	AC9	A	80	97	Right-handed alpha
Helix 28	AD1	A	112	126	Right-handed alpha
Helix 29	AD2	A	137	148	Right-handed alpha
Helix 30	AD3	A	159	168	Right-handed alpha
Helix 31	AD4	A	225	239	Right-handed alpha
Helix 32	AD5	A	254	262	Right-handed alpha
Helix 33	AD6	A	262	268	Right-handed alpha
Helix 34	AD7	A	282	293	Right-handed alpha
Helix 35	AD8	A	301	309	Right-handed alpha
Helix 36	AD9	A	310	311	Right-handed 310
Helix 37	AE1	A	312	316	Right-handed 310
Helix 38	AE2	A	332	344	Right-handed alpha
Helix 39	AE3	A	418	425	Right-handed alpha
Helix 40	AE4	A	463	473	Right-handed alpha
Helix 41	AE5	A	507	522	Right-handed alpha
Helix 42	AE6	A	523	527	Right-handed 310
Helix 43	AE7	A	546	559	Right-handed alpha
Helix 44	AE8	B	11	23	Right-handed alpha
Helix 45	AE9	B	25	38	Right-handed alpha
Helix 46	AF1	B	45	50	Right-handed alpha
Helix 47	AF2	B	54	60	Right-handed alpha
Helix 48	AF3	B	80	97	Right-handed alpha
Helix 49	AF4	B	112	126	Right-handed alpha
Helix 50	AF5	B	137	148	Right-handed alpha
Helix 51	AF6	B	159	168	Right-handed alpha
Helix 52	AF7	B	225	231	Right-handed alpha
Helix 53	AF8	B	231	239	Right-handed alpha
Helix 54	AF9	B	254	261	Right-handed alpha
Helix 55	AG1	B	262	268	Right-handed alpha
Helix 56	AG2	B	282	293	Right-handed alpha
Helix 57	AG3	B	301	309	Right-handed alpha
Helix 58	AG4	B	310	311	Right-handed 310
Helix 59	AG5	B	312	316	Right-handed 310
Helix 60	AG6	B	332	344	Right-handed alpha
Helix 61	AG7	B	418	425	Right-handed alpha
Helix 62	AG8	B	463	473	Right-handed alpha
Helix 63	AG9	B	507	522	Right-handed alpha
Helix 64	AH1	B	523	527	Right-handed 310
Helix 65	AH2	B	546	559	Right-handed alpha
Helix 66	AH3	C	11	23	Right-handed alpha
Helix 67	AH4	C	25	38	Right-handed alpha
Helix 68	AH5	C	45	50	Right-handed alpha
Helix 69	AH6	C	54	60	Right-handed alpha
Helix 70	AH7	C	80	97	Right-handed alpha
Helix 71	AH8	C	112	126	Right-handed alpha
Helix 72	AH9	C	137	148	Right-handed alpha
Helix 73	AI1	C	159	168	Right-handed alpha
Helix 74	AI2	C	225	239	Right-handed alpha
Helix 75	AI3	C	254	262	Right-handed alpha
Helix 76	AI4	C	262	268	Right-handed alpha
Helix 77	AI5	C	282	293	Right-handed alpha
Helix 78	AI6	C	301	309	Right-handed alpha
Helix 79	AI7	C	310	311	Right-handed 310
Helix 80	AI8	C	312	316	Right-handed 310
Helix 81	AI9	C	332	344	Right-handed alpha
Helix 82	AJ1	C	418	425	Right-handed alpha
Helix 83	AJ2	C	463	473	Right-handed alpha
Helix 84	AJ3	C	507	522	Right-handed alpha
Helix 85	AJ4	C	523	527	Right-handed 310
Helix 86	AJ5	C	547	559	Right-handed alpha

There are 28 sheets in PDB entry 8BIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	79	first strand
Strand 2	D	63	69	anti-parallel
Strand 3	D	271	276	parallel
Strand 4	D	245	248	parallel
Strand 5	D	297	299	parallel
Strand 6	D	323	327	parallel
Strand 7	D	347	351	parallel
Strand 8	D	360	361	anti-parallel
Strand 9	D	375	376	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	104	108	parallel
Strand 3	D	152	155	parallel
Strand 4	D	173	176	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	210	first strand
Strand 2	D	218	223	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	385	first strand
Strand 2	D	399	404	anti-parallel
Strand 3	D	430	439	anti-parallel
Strand 4	D	426	427	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	385	first strand
Strand 2	D	399	404	anti-parallel
Strand 3	D	430	439	anti-parallel
Strand 4	D	445	450	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	460	462	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	487	first strand
Strand 2	D	491	500	anti-parallel
Strand 3	D	530	533	parallel
Strand 4	D	567	569	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	271	276	parallel
Strand 4	A	245	248	parallel
Strand 5	A	297	299	parallel
Strand 6	A	323	327	parallel
Strand 7	A	347	351	parallel
Strand 8	A	360	361	anti-parallel
Strand 9	A	375	376	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	104	108	parallel
Strand 3	A	152	155	parallel
Strand 4	A	173	176	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	415	416	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	399	404	anti-parallel
Strand 3	A	430	439	anti-parallel
Strand 4	A	426	427	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	399	404	anti-parallel
Strand 3	A	430	439	anti-parallel
Strand 4	A	445	450	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	457	first strand
Strand 2	A	460	462	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	487	first strand
Strand 2	A	491	500	anti-parallel
Strand 3	A	530	533	parallel
Strand 4	A	567	569	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	63	69	anti-parallel
Strand 3	B	271	276	parallel
Strand 4	B	245	248	parallel
Strand 5	B	297	299	parallel
Strand 6	B	323	327	parallel
Strand 7	B	347	351	parallel
Strand 8	B	360	361	anti-parallel
Strand 9	B	375	376	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	104	108	parallel
Strand 3	B	152	155	parallel
Strand 4	B	173	176	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	218	223	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	430	439	anti-parallel
Strand 4	B	426	427	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	385	first strand
Strand 2	B	399	404	anti-parallel
Strand 3	B	430	439	anti-parallel
Strand 4	B	445	450	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	460	462	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	487	first strand
Strand 2	B	491	500	anti-parallel
Strand 3	B	530	533	parallel
Strand 4	B	567	569	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	271	276	parallel
Strand 4	C	245	248	parallel
Strand 5	C	297	299	parallel
Strand 6	C	323	327	parallel
Strand 7	C	347	351	parallel
Strand 8	C	360	361	anti-parallel
Strand 9	C	375	376	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	104	108	parallel
Strand 3	C	152	155	parallel
Strand 4	C	173	176	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	210	first strand
Strand 2	C	218	223	anti-parallel
Strand 3	C	415	416	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	385	first strand
Strand 2	C	399	404	anti-parallel
Strand 3	C	430	439	anti-parallel
Strand 4	C	426	427	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	385	first strand
Strand 2	C	399	404	anti-parallel
Strand 3	C	430	439	anti-parallel
Strand 4	C	445	450	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	460	462	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	487	first strand
Strand 2	C	491	500	anti-parallel
Strand 3	C	530	533	parallel
Strand 4	C	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BIQ