Analysis of interatomic Contacts of Structural Units in PDB entry:
8BIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BIW entry

There are 2 chains in PDB entry 8BIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLY 21ALA 417
A
 GLY 21ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8BIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
34 42Right-handed alpha
Helix 2
AA2
E
83 98Right-handed alpha
Helix 3
AA3
E
107 120Right-handed alpha
Helix 4
AA4
E
133 142Right-handed alpha
Helix 5
AA5
E
143 148Right-handed 310
Helix 6
AA6
E
158 166Right-handed alpha
Helix 7
AA7
E
187 199Right-handed alpha
Helix 8
AA8
E
215 220Right-handed 310
Helix 9
AA9
E
247 262Right-handed alpha
Helix 10
AB1
E
266 277Right-handed alpha
Helix 11
AB2
E
279 300Right-handed alpha
Helix 12
AB3
E
317 325Right-handed alpha
Helix 13
AB4
E
339 350Right-handed alpha
Helix 14
AB5
E
384 388Right-handed 310
Helix 15
AB6
E
402 415Right-handed alpha
Helix 16
AB7
A
34 42Right-handed alpha
Helix 17
AB8
A
83 98Right-handed alpha
Helix 18
AB9
A
107 120Right-handed alpha
Helix 19
AC1
A
133 143Right-handed alpha
Helix 20
AC2
A
144 148Right-handed 310
Helix 21
AC3
A
158 166Right-handed alpha
Helix 22
AC4
A
187 199Right-handed alpha
Helix 23
AC5
A
247 262Right-handed alpha
Helix 24
AC6
A
266 277Right-handed alpha
Helix 25
AC7
A
279 301Right-handed alpha
Helix 26
AC8
A
317 325Right-handed alpha
Helix 27
AC9
A
339 350Right-handed alpha
Helix 28
AD1
A
402 417Right-handed alpha
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There are 4 sheets in PDB entry 8BIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 105first strand
Strand 2
E
241 245anti-parallel
Strand 3
E
223 227anti-parallel
Strand 4
E
201 205parallel
Strand 5
E
170 176parallel
Strand 6
E
125 129parallel
Strand 7
E
150 154parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
304 308first strand
Strand 2
E
332 337anti-parallel
Strand 3
E
393 397anti-parallel
Strand 4
E
367 369anti-parallel
Strand 5
E
356 357parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
223 227anti-parallel
Strand 4
A
201 205parallel
Strand 5
A
170 176parallel
Strand 6
A
125 129parallel
Strand 7
A
150 154parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 308first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
393 397anti-parallel
Strand 4
A
367 369anti-parallel
Strand 5
A
356 357parallel
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