Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BJ2 entry

There are 4 chains in PDB entry 8BJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 25SER 243
A
 ARG 245SER 384
B
 ASP 25SER 243
B
 ARG 245SER 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 8BJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
72 79Right-handed alpha
Helix 5
AA5
A
92 104Right-handed alpha
Helix 6
AA6
A
106 108Right-handed 310
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
141 151Right-handed alpha
Helix 9
AA9
A
167 179Right-handed alpha
Helix 10
AB1
A
197 206Right-handed alpha
Helix 11
AB2
A
217 221Right-handed 310
Helix 12
AB3
A
226 232Right-handed 310
Helix 13
AB4
A
259 270Right-handed alpha
Helix 14
AB5
A
276 288Right-handed alpha
Helix 15
AB6
A
289 314Right-handed alpha
Helix 16
AB7
A
336 347Right-handed alpha
Helix 17
AB8
A
369 382Right-handed alpha
Helix 18
AB9
B
29 33Right-handed 310
Helix 19
AC1
B
43 52Right-handed alpha
Helix 20
AC2
B
54 58Right-handed 310
Helix 21
AC3
B
72 79Right-handed alpha
Helix 22
AC4
B
92 104Right-handed alpha
Helix 23
AC5
B
106 108Right-handed 310
Helix 24
AC6
B
114 128Right-handed alpha
Helix 25
AC7
B
142 151Right-handed alpha
Helix 26
AC8
B
167 179Right-handed alpha
Helix 27
AC9
B
197 206Right-handed alpha
Helix 28
AD1
B
217 221Right-handed 310
Helix 29
AD2
B
226 232Right-handed 310
Helix 30
AD3
B
248 252Right-handed 310
Helix 31
AD4
B
259 270Right-handed alpha
Helix 32
AD5
B
276 288Right-handed alpha
Helix 33
AD6
B
289 313Right-handed alpha
Helix 34
AD7
B
336 347Right-handed alpha
Helix 35
AD8
B
369 382Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8BJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
349 350parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
254 257anti-parallel
Strand 3
A
236 241anti-parallel
Strand 4
A
210 214parallel
Strand 5
A
182 186parallel
Strand 6
A
133 136parallel
Strand 7
A
154 157parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
326 331anti-parallel
Strand 3
A
362 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
349 350parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
254 257anti-parallel
Strand 3
B
236 241anti-parallel
Strand 4
B
210 214parallel
Strand 5
B
182 186parallel
Strand 6
B
133 136parallel
Strand 7
B
154 157parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
326 331anti-parallel
Strand 3
B
362 366anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il