Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BJ5 entry

There are 4 chains in PDB entry 8BJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ASP 284
B
 SER 0ASP 284
C
 SER 0ASP 284
D
 GLU -1ASP 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 8BJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
35 42Right-handed alpha
Helix 4
AA4
A
48 56Right-handed alpha
Helix 5
AA5
A
65 74Right-handed alpha
Helix 6
AA6
A
75 80Right-handed 310
Helix 7
AA7
A
92 106Right-handed alpha
Helix 8
AA8
A
118 122Right-handed 310
Helix 9
AA9
A
134 149Right-handed alpha
Helix 10
AB1
A
158 189Right-handed alpha
Helix 11
AB2
A
192 206Right-handed alpha
Helix 12
AB3
A
207 220Right-handed alpha
Helix 13
AB4
A
229 248Right-handed alpha
Helix 14
AB5
A
251 267Right-handed alpha
Helix 15
AB6
A
273 275Right-handed 310
Helix 16
AB7
A
276 282Right-handed alpha
Helix 17
AB8
B
8 21Right-handed alpha
Helix 18
AB9
B
31 34Right-handed 310
Helix 19
AC1
B
35 42Right-handed alpha
Helix 20
AC2
B
48 56Right-handed alpha
Helix 21
AC3
B
65 74Right-handed alpha
Helix 22
AC4
B
75 81Right-handed 310
Helix 23
AC5
B
92 106Right-handed alpha
Helix 24
AC6
B
118 122Right-handed 310
Helix 25
AC7
B
134 146Right-handed alpha
Helix 26
AC8
B
158 189Right-handed alpha
Helix 27
AC9
B
192 195Right-handed 310
Helix 28
AD1
B
196 206Right-handed alpha
Helix 29
AD2
B
207 220Right-handed alpha
Helix 30
AD3
B
229 248Right-handed alpha
Helix 31
AD4
B
251 267Right-handed alpha
Helix 32
AD5
B
273 275Right-handed 310
Helix 33
AD6
B
276 282Right-handed alpha
Helix 34
AD7
C
8 21Right-handed alpha
Helix 35
AD8
C
31 34Right-handed 310
Helix 36
AD9
C
35 42Right-handed alpha
Helix 37
AE1
C
48 56Right-handed alpha
Helix 38
AE2
C
65 74Right-handed alpha
Helix 39
AE3
C
75 81Right-handed 310
Helix 40
AE4
C
92 106Right-handed alpha
Helix 41
AE5
C
118 122Right-handed 310
Helix 42
AE6
C
134 146Right-handed alpha
Helix 43
AE7
C
158 189Right-handed alpha
Helix 44
AE8
C
192 206Right-handed alpha
Helix 45
AE9
C
207 220Right-handed alpha
Helix 46
AF1
C
229 248Right-handed alpha
Helix 47
AF2
C
251 267Right-handed alpha
Helix 48
AF3
C
273 275Right-handed 310
Helix 49
AF4
C
276 282Right-handed alpha
Helix 50
AF5
D
8 21Right-handed alpha
Helix 51
AF6
D
31 34Right-handed 310
Helix 52
AF7
D
35 42Right-handed alpha
Helix 53
AF8
D
48 56Right-handed alpha
Helix 54
AF9
D
65 74Right-handed alpha
Helix 55
AG1
D
75 81Right-handed 310
Helix 56
AG2
D
92 106Right-handed alpha
Helix 57
AG3
D
118 122Right-handed 310
Helix 58
AG4
D
134 146Right-handed alpha
Helix 59
AG5
D
158 189Right-handed alpha
Helix 60
AG6
D
192 195Right-handed 310
Helix 61
AG7
D
196 206Right-handed alpha
Helix 62
AG8
D
207 220Right-handed alpha
Helix 63
AG9
D
229 248Right-handed alpha
Helix 64
AH1
D
251 267Right-handed alpha
Helix 65
AH2
D
273 275Right-handed 310
Helix 66
AH3
D
276 282Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8BJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
24 28parallel
Strand 3
A
1 5parallel
Strand 4
A
58 61parallel
Strand 5
A
84 87parallel
Strand 6
A
109 115parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
150 153parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
24 28parallel
Strand 3
B
1 5parallel
Strand 4
B
58 61parallel
Strand 5
B
84 87parallel
Strand 6
B
109 115parallel
Strand 7
B
128 132anti-parallel
Strand 8
B
150 153parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
25 28parallel
Strand 3
C
2 5parallel
Strand 4
C
58 61parallel
Strand 5
C
84 87parallel
Strand 6
C
109 115parallel
Strand 7
C
128 132anti-parallel
Strand 8
C
150 153parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
24 28parallel
Strand 3
D
1 5parallel
Strand 4
D
58 61parallel
Strand 5
D
84 87parallel
Strand 6
D
109 115parallel
Strand 7
D
128 132anti-parallel
Strand 8
D
150 153parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il