Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BJ6 entry

There are 3 chains in PDB entry 8BJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 320
B
 SER 0LEU 320
C
 MSE 1LEU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8BJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
15 37Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
44 54Right-handed alpha
Helix 5
AA5
A
59 80Right-handed alpha
Helix 6
AA6
A
96 101Right-handed alpha
Helix 7
AA7
A
110 121Right-handed alpha
Helix 8
AA8
A
123 135Right-handed alpha
Helix 9
AA9
A
139 141Right-handed 310
Helix 10
AB1
A
142 147Right-handed alpha
Helix 11
AB2
A
149 158Right-handed alpha
Helix 12
AB3
A
178 189Right-handed alpha
Helix 13
AB4
A
197 200Right-handed 310
Helix 14
AB5
A
220 224Right-handed 310
Helix 15
AB6
A
231 247Right-handed alpha
Helix 16
AB7
A
252 273Right-handed alpha
Helix 17
AB8
A
276 287Right-handed alpha
Helix 18
AB9
A
293 301Right-handed alpha
Helix 19
AC1
A
302 304Right-handed 310
Helix 20
AC2
A
306 319Right-handed alpha
Helix 21
AC3
B
3 12Right-handed alpha
Helix 22
AC4
B
15 37Right-handed alpha
Helix 23
AC5
B
39 43Right-handed 310
Helix 24
AC6
B
44 54Right-handed alpha
Helix 25
AC7
B
59 80Right-handed alpha
Helix 26
AC8
B
96 101Right-handed alpha
Helix 27
AC9
B
110 121Right-handed alpha
Helix 28
AD1
B
123 136Right-handed alpha
Helix 29
AD2
B
139 141Right-handed 310
Helix 30
AD3
B
142 147Right-handed alpha
Helix 31
AD4
B
149 158Right-handed alpha
Helix 32
AD5
B
178 189Right-handed alpha
Helix 33
AD6
B
197 200Right-handed 310
Helix 34
AD7
B
220 224Right-handed 310
Helix 35
AD8
B
231 247Right-handed alpha
Helix 36
AD9
B
252 273Right-handed alpha
Helix 37
AE1
B
276 287Right-handed alpha
Helix 38
AE2
B
293 301Right-handed alpha
Helix 39
AE3
B
302 304Right-handed 310
Helix 40
AE4
B
306 319Right-handed alpha
Helix 41
AE5
C
3 12Right-handed alpha
Helix 42
AE6
C
15 37Right-handed alpha
Helix 43
AE7
C
39 43Right-handed 310
Helix 44
AE8
C
44 55Right-handed alpha
Helix 45
AE9
C
59 80Right-handed alpha
Helix 46
AF1
C
96 101Right-handed alpha
Helix 47
AF2
C
110 121Right-handed alpha
Helix 48
AF3
C
123 136Right-handed alpha
Helix 49
AF4
C
139 141Right-handed 310
Helix 50
AF5
C
142 147Right-handed alpha
Helix 51
AF6
C
149 158Right-handed alpha
Helix 52
AF7
C
178 189Right-handed alpha
Helix 53
AF8
C
197 200Right-handed 310
Helix 54
AF9
C
220 224Right-handed 310
Helix 55
AG1
C
231 247Right-handed alpha
Helix 56
AG2
C
252 273Right-handed alpha
Helix 57
AG3
C
276 287Right-handed alpha
Helix 58
AG4
C
293 301Right-handed alpha
Helix 59
AG5
C
302 304Right-handed 310
Helix 60
AG6
C
306 314Right-handed alpha
Helix 61
AG7
C
314 319Right-handed alpha
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There are 6 sheets in PDB entry 8BJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
171 176anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
207 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
173 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
207 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 167first strand
Strand 2
C
171 176anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 195first strand
Strand 2
C
207 209anti-parallel
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