Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BJA entry

There are 2 chains in PDB entry 8BJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLY 2797
A	MET 1	PHE 2798

There are135 helices in PDB entry 8BJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	14	32	Right-handed alpha
Helix 2	AA2	B	37	39	Right-handed 310
Helix 3	AA3	B	40	45	Right-handed alpha
Helix 4	AA4	B	449	455	Right-handed 310
Helix 5	AA5	B	499	504	Right-handed alpha
Helix 6	AA6	B	504	515	Right-handed alpha
Helix 7	AA7	B	578	583	Right-handed alpha
Helix 8	AA8	B	700	708	Right-handed alpha
Helix 9	AA9	B	787	793	Right-handed alpha
Helix 10	AB1	B	795	799	Right-handed 310
Helix 11	AB2	B	874	882	Right-handed alpha
Helix 12	AB3	B	884	900	Right-handed alpha
Helix 13	AB4	B	909	914	Right-handed alpha
Helix 14	AB5	B	921	929	Right-handed alpha
Helix 15	AB6	B	1078	1095	Right-handed alpha
Helix 16	AB7	B	1098	1100	Right-handed 310
Helix 17	AB8	B	1101	1106	Right-handed alpha
Helix 18	AB9	B	1116	1123	Right-handed alpha
Helix 19	AC1	B	1125	1142	Right-handed alpha
Helix 20	AC2	B	1143	1147	Right-handed 310
Helix 21	AC3	B	1149	1156	Right-handed alpha
Helix 22	AC4	B	1164	1167	Right-handed 310
Helix 23	AC5	B	1168	1176	Right-handed alpha
Helix 24	AC6	B	1180	1185	Right-handed alpha
Helix 25	AC7	B	1208	1214	Right-handed alpha
Helix 26	AC8	B	1233	1238	Right-handed alpha
Helix 27	AC9	B	1247	1259	Right-handed alpha
Helix 28	AD1	B	1274	1290	Right-handed alpha
Helix 29	AD2	B	1291	1293	Right-handed 310
Helix 30	AD3	B	1324	1334	Right-handed alpha
Helix 31	AD4	B	1335	1344	Right-handed alpha
Helix 32	AD5	B	1358	1362	Right-handed 310
Helix 33	AD6	B	1365	1372	Right-handed alpha
Helix 34	AD7	B	1377	1389	Right-handed alpha
Helix 35	AD8	B	1396	1409	Right-handed alpha
Helix 36	AD9	B	1416	1443	Right-handed alpha
Helix 37	AE1	B	1454	1467	Right-handed alpha
Helix 38	AE2	B	1467	1488	Right-handed alpha
Helix 39	AE3	B	1502	1515	Right-handed alpha
Helix 40	AE4	B	1777	1800	Right-handed alpha
Helix 41	AE5	B	1804	1809	Right-handed alpha
Helix 42	AE6	B	1820	1860	Right-handed alpha
Helix 43	AE7	B	1912	1929	Right-handed alpha
Helix 44	AE8	B	1940	1943	Right-handed 310
Helix 45	AE9	B	1944	1964	Right-handed alpha
Helix 46	AF1	B	2044	2048	Right-handed alpha
Helix 47	AF2	B	2048	2053	Right-handed alpha
Helix 48	AF3	B	2062	2066	Right-handed 310
Helix 49	AF4	B	2103	2114	Right-handed alpha
Helix 50	AF5	B	2165	2169	Right-handed 310
Helix 51	AF6	B	2181	2189	Right-handed alpha
Helix 52	AF7	B	2190	2200	Right-handed alpha
Helix 53	AF8	B	2203	2207	Right-handed 310
Helix 54	AF9	B	2217	2236	Right-handed alpha
Helix 55	AG1	B	2247	2267	Right-handed alpha
Helix 56	AG2	B	2288	2305	Right-handed alpha
Helix 57	AG3	B	2522	2540	Right-handed alpha
Helix 58	AG4	B	2551	2559	Right-handed alpha
Helix 59	AG5	B	2564	2571	Right-handed 310
Helix 60	AG6	B	2572	2586	Right-handed alpha
Helix 61	AG7	B	2587	2589	Right-handed 310
Helix 62	AG8	B	2590	2599	Right-handed alpha
Helix 63	AG9	B	2627	2630	Right-handed 310
Helix 64	AH1	B	2631	2644	Right-handed alpha
Helix 65	AH2	B	2647	2662	Right-handed alpha
Helix 66	AH3	B	2663	2667	Right-handed 310
Helix 67	AH4	B	2671	2680	Right-handed alpha
Helix 68	AH5	B	2686	2693	Right-handed alpha
Helix 69	AH6	B	2703	2719	Right-handed alpha
Helix 70	AH7	B	2722	2735	Right-handed alpha
Helix 71	AH8	B	2779	2794	Right-handed alpha
Helix 72	AH9	A	14	32	Right-handed alpha
Helix 73	AI1	A	449	454	Right-handed 310
Helix 74	AI2	A	466	471	Right-handed 310
Helix 75	AI3	A	498	515	Right-handed alpha
Helix 76	AI4	A	788	793	Right-handed alpha
Helix 77	AI5	A	874	882	Right-handed alpha
Helix 78	AI6	A	886	900	Right-handed alpha
Helix 79	AI7	A	902	906	Right-handed 310
Helix 80	AI8	A	907	913	Right-handed alpha
Helix 81	AI9	A	921	930	Right-handed alpha
Helix 82	AJ1	A	1078	1094	Right-handed alpha
Helix 83	AJ2	A	1098	1100	Right-handed 310
Helix 84	AJ3	A	1101	1107	Right-handed alpha
Helix 85	AJ4	A	1115	1123	Right-handed alpha
Helix 86	AJ5	A	1125	1141	Right-handed alpha
Helix 87	AJ6	A	1150	1156	Right-handed alpha
Helix 88	AJ7	A	1164	1167	Right-handed 310
Helix 89	AJ8	A	1168	1175	Right-handed alpha
Helix 90	AJ9	A	1180	1185	Right-handed alpha
Helix 91	AK1	A	1209	1213	Right-handed alpha
Helix 92	AK2	A	1233	1238	Right-handed alpha
Helix 93	AK3	A	1247	1262	Right-handed alpha
Helix 94	AK4	A	1274	1290	Right-handed alpha
Helix 95	AK5	A	1291	1293	Right-handed 310
Helix 96	AK6	A	1325	1333	Right-handed alpha
Helix 97	AK7	A	1335	1344	Right-handed alpha
Helix 98	AK8	A	1364	1369	Right-handed alpha
Helix 99	AK9	A	1377	1389	Right-handed alpha
Helix 100	AL1	A	1395	1410	Right-handed alpha
Helix 101	AL2	A	1417	1443	Right-handed alpha
Helix 102	AL3	A	1454	1467	Right-handed alpha
Helix 103	AL4	A	1467	1488	Right-handed alpha
Helix 104	AL5	A	1502	1514	Right-handed alpha
Helix 105	AL6	A	1777	1801	Right-handed alpha
Helix 106	AL7	A	1804	1809	Right-handed alpha
Helix 107	AL8	A	1821	1863	Right-handed alpha
Helix 108	AL9	A	1912	1929	Right-handed alpha
Helix 109	AM1	A	1940	1943	Right-handed 310
Helix 110	AM2	A	1944	1962	Right-handed alpha
Helix 111	AM3	A	2043	2048	Right-handed alpha
Helix 112	AM4	A	2048	2053	Right-handed alpha
Helix 113	AM5	A	2062	2067	Right-handed alpha
Helix 114	AM6	A	2183	2189	Right-handed alpha
Helix 115	AM7	A	2189	2196	Right-handed alpha
Helix 116	AM8	A	2210	2216	Right-handed alpha
Helix 117	AM9	A	2217	2236	Right-handed alpha
Helix 118	AN1	A	2247	2266	Right-handed alpha
Helix 119	AN2	A	2288	2305	Right-handed alpha
Helix 120	AN3	A	2522	2543	Right-handed alpha
Helix 121	AN4	A	2551	2560	Right-handed alpha
Helix 122	AN5	A	2567	2572	Right-handed alpha
Helix 123	AN6	A	2572	2586	Right-handed alpha
Helix 124	AN7	A	2587	2589	Right-handed 310
Helix 125	AN8	A	2590	2599	Right-handed alpha
Helix 126	AN9	A	2630	2644	Right-handed alpha
Helix 127	AO1	A	2647	2660	Right-handed alpha
Helix 128	AO2	A	2663	2667	Right-handed 310
Helix 129	AO3	A	2671	2681	Right-handed alpha
Helix 130	AO4	A	2686	2694	Right-handed alpha
Helix 131	AO5	A	2710	2721	Right-handed alpha
Helix 132	AO6	A	2722	2724	Right-handed 310
Helix 133	AO7	A	2725	2735	Right-handed alpha
Helix 134	AO8	A	2742	2746	Right-handed 310
Helix 135	AO9	A	2780	2794	Right-handed alpha

There are 32 sheets in PDB entry 8BJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	863	870	anti-parallel
Strand 3	B	846	850	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	67	73	anti-parallel
Strand 4	B	355	356	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	67	73	anti-parallel
Strand 4	B	361	362	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	383	385	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	429	first strand
Strand 2	B	433	438	anti-parallel
Strand 3	B	442	447	anti-parallel
Strand 4	B	460	464	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	482	486	anti-parallel
Strand 3	B	491	495	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	709	712	first strand
Strand 2	B	677	681	anti-parallel
Strand 3	B	668	674	anti-parallel
Strand 4	B	533	536	anti-parallel
Strand 5	B	716	718	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	652	first strand
Strand 2	B	571	576	anti-parallel
Strand 3	B	556	560	anti-parallel
Strand 4	B	547	551	anti-parallel
Strand 5	B	657	658	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	752	first strand
Strand 2	B	755	761	anti-parallel
Strand 3	B	766	767	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	752	first strand
Strand 2	B	755	761	anti-parallel
Strand 3	B	770	771	anti-parallel
Strand 4	B	778	780	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	803	first strand
Strand 2	B	810	813	anti-parallel
Strand 3	B	819	820	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1189	1190	first strand
Strand 2	B	1229	1230	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1193	1196	first strand
Strand 2	B	1221	1224	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2240	2244	first strand
Strand 2	B	2277	2281	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2505	2506	first strand
Strand 2	B	2515	2516	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2603	2605	first strand
Strand 2	B	2614	2616	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2695	2698	first strand
Strand 2	B	2751	2755	parallel
Strand 3	B	2771	2775	parallel
Strand 4	B	2764	2766	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	864	872	anti-parallel
Strand 3	A	841	849	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	70	73	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	383	385	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	433	438	anti-parallel
Strand 3	A	442	447	anti-parallel
Strand 4	A	460	464	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	482	486	anti-parallel
Strand 3	A	491	495	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	712	first strand
Strand 2	A	677	681	anti-parallel
Strand 3	A	667	674	anti-parallel
Strand 4	A	533	536	anti-parallel
Strand 5	A	716	718	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	560	first strand
Strand 2	A	547	551	anti-parallel
Strand 3	A	656	660	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	752	first strand
Strand 2	A	755	762	anti-parallel
Strand 3	A	765	771	anti-parallel
Strand 4	A	778	782	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	802	first strand
Strand 2	A	811	813	anti-parallel
Strand 3	A	819	820	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1190	first strand
Strand 2	A	1229	1230	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1208	first strand
Strand 2	A	1193	1196	anti-parallel
Strand 3	A	1221	1224	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2240	2244	first strand
Strand 2	A	2277	2281	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2505	2506	first strand
Strand 2	A	2515	2516	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2603	2605	first strand
Strand 2	A	2614	2616	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2751	2755	first strand
Strand 2	A	2771	2775	parallel
Strand 3	A	2764	2766	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJA