Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BJI entry

There are 2 chains in PDB entry 8BJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	PHE 375
B	LYS 466	TYR 1041

There are 39 helices in PDB entry 8BJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	195	Right-handed alpha
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	263	Right-handed alpha
Helix 11	AB2	A	264	268	Right-handed 310
Helix 12	AB3	A	273	285	Right-handed alpha
Helix 13	AB4	A	286	288	Right-handed 310
Helix 14	AB5	A	289	295	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	337	348	Right-handed alpha
Helix 18	AB9	A	351	356	Right-handed alpha
Helix 19	AC1	A	359	366	Right-handed alpha
Helix 20	AC2	A	368	374	Right-handed alpha
Helix 21	AC3	B	489	504	Right-handed alpha
Helix 22	AC4	B	513	515	Right-handed 310
Helix 23	AC5	B	516	522	Right-handed alpha
Helix 24	AC6	B	549	553	Right-handed 310
Helix 25	AC7	B	554	559	Right-handed alpha
Helix 26	AC8	B	560	574	Right-handed alpha
Helix 27	AC9	B	585	594	Right-handed alpha
Helix 28	AD1	B	675	678	Right-handed 310
Helix 29	AD2	B	729	743	Right-handed alpha
Helix 30	AD3	B	763	768	Right-handed alpha
Helix 31	AD4	B	775	780	Right-handed 310
Helix 32	AD5	B	790	795	Right-handed alpha
Helix 33	AD6	B	807	821	Right-handed alpha
Helix 34	AD7	B	847	861	Right-handed alpha
Helix 35	AD8	B	905	914	Right-handed alpha
Helix 36	AD9	B	940	944	Right-handed 310
Helix 37	AE1	B	945	954	Right-handed alpha
Helix 38	AE2	B	958	962	Right-handed 310
Helix 39	AE3	B	1021	1039	Right-handed alpha

There are 12 sheets in PDB entry 8BJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	473	475	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	797	first strand
Strand 2	B	803	805	anti-parallel
Strand 3	B	770	773	anti-parallel
Strand 4	B	505	509	anti-parallel
Strand 5	B	668	673	anti-parallel
Strand 6	B	824	825	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	662	663	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	581	first strand
Strand 2	B	651	654	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	643	anti-parallel
Strand 3	B	623	631	anti-parallel
Strand 4	B	611	614	anti-parallel
Strand 5	B	603	604	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	634	643	anti-parallel
Strand 3	B	646	649	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	931	935	first strand
Strand 2	B	918	925	anti-parallel
Strand 3	B	1010	1016	anti-parallel
Strand 4	B	1001	1006	anti-parallel
Strand 5	B	986	991	anti-parallel
Strand 6	B	970	978	anti-parallel
Strand 7	B	965	967	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJI