Analysis of interatomic Contacts of Structural Units in PDB entry:
8BJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BJS entry

There are 2 chains in PDB entry 8BJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 62HIS 508
U
 UNK 251UNK 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8BJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 80Right-handed alpha
Helix 2
AA2
A
131 139Right-handed alpha
Helix 3
AA3
A
139 150Right-handed alpha
Helix 4
AA4
A
164 170Right-handed alpha
Helix 5
AA5
A
177 191Right-handed alpha
Helix 6
AA6
A
212 228Right-handed alpha
Helix 7
AA7
A
350 368Right-handed alpha
Helix 8
AA8
A
432 446Right-handed alpha
Helix 9
AA9
A
457 460Right-handed 310
Helix 10
AB1
A
461 467Right-handed alpha
Helix 11
AB2
A
468 471Right-handed 310
Helix 12
AB3
A
489 501Right-handed alpha
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There are 5 sheets in PDB entry 8BJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
65 70parallel
Strand 3
A
476 483parallel
Strand 4
A
153 158parallel
Strand 5
A
397 407parallel
Strand 6
A
380 391anti-parallel
Strand 7
A
296 308anti-parallel
Strand 8
A
311 314anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
65 70parallel
Strand 3
A
476 483parallel
Strand 4
A
153 158parallel
Strand 5
A
397 407parallel
Strand 6
A
380 391anti-parallel
Strand 7
A
296 308anti-parallel
Strand 8
A
346 348anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
117 121anti-parallel
Strand 4
A
503 506anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
207 210anti-parallel
Strand 3
U
252 253anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
338 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il