Analysis of interatomic Contacts of Structural Units in PDB entry:
8BK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BK1 entry

There are 4 chains in PDB entry 8BK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1LYS 286
B
 GLU -1ARG 285
C
 SER 0LYS 286
D
 GLU -1LYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8BK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
31 34Right-handed 310
Helix 3
AA3
A
35 41Right-handed alpha
Helix 4
AA4
A
48 55Right-handed alpha
Helix 5
AA5
A
66 74Right-handed alpha
Helix 6
AA6
A
75 76Right-handed 310
Helix 7
AA7
A
77 81Right-handed 310
Helix 8
AA8
A
92 106Right-handed alpha
Helix 9
AA9
A
118 122Right-handed 310
Helix 10
AB1
A
134 146Right-handed alpha
Helix 11
AB2
A
159 189Right-handed alpha
Helix 12
AB3
A
192 206Right-handed alpha
Helix 13
AB4
A
206 212Right-handed alpha
Helix 14
AB5
A
213 221Right-handed alpha
Helix 15
AB6
A
229 247Right-handed alpha
Helix 16
AB7
A
251 267Right-handed alpha
Helix 17
AB8
A
273 275Right-handed 310
Helix 18
AB9
A
276 282Right-handed alpha
Helix 19
AC1
B
8 20Right-handed alpha
Helix 20
AC2
B
31 34Right-handed 310
Helix 21
AC3
B
35 42Right-handed alpha
Helix 22
AC4
B
48 55Right-handed alpha
Helix 23
AC5
B
66 74Right-handed alpha
Helix 24
AC6
B
75 76Right-handed 310
Helix 25
AC7
B
77 81Right-handed 310
Helix 26
AC8
B
92 105Right-handed alpha
Helix 27
AC9
B
118 122Right-handed 310
Helix 28
AD1
B
134 146Right-handed alpha
Helix 29
AD2
B
158 189Right-handed alpha
Helix 30
AD3
B
192 212Right-handed alpha
Helix 31
AD4
B
213 221Right-handed alpha
Helix 32
AD5
B
229 248Right-handed alpha
Helix 33
AD6
B
251 267Right-handed alpha
Helix 34
AD7
B
273 275Right-handed 310
Helix 35
AD8
B
276 282Right-handed alpha
Helix 36
AD9
C
8 20Right-handed alpha
Helix 37
AE1
C
31 34Right-handed 310
Helix 38
AE2
C
35 41Right-handed alpha
Helix 39
AE3
C
48 55Right-handed alpha
Helix 40
AE4
C
66 74Right-handed alpha
Helix 41
AE5
C
75 76Right-handed 310
Helix 42
AE6
C
77 81Right-handed 310
Helix 43
AE7
C
92 105Right-handed alpha
Helix 44
AE8
C
118 122Right-handed 310
Helix 45
AE9
C
134 146Right-handed alpha
Helix 46
AF1
C
159 189Right-handed alpha
Helix 47
AF2
C
192 206Right-handed alpha
Helix 48
AF3
C
206 212Right-handed alpha
Helix 49
AF4
C
213 221Right-handed alpha
Helix 50
AF5
C
229 248Right-handed alpha
Helix 51
AF6
C
251 267Right-handed alpha
Helix 52
AF7
C
273 275Right-handed 310
Helix 53
AF8
C
276 282Right-handed alpha
Helix 54
AF9
D
8 20Right-handed alpha
Helix 55
AG1
D
31 34Right-handed 310
Helix 56
AG2
D
35 42Right-handed alpha
Helix 57
AG3
D
48 55Right-handed alpha
Helix 58
AG4
D
66 74Right-handed alpha
Helix 59
AG5
D
75 76Right-handed 310
Helix 60
AG6
D
77 81Right-handed 310
Helix 61
AG7
D
92 105Right-handed alpha
Helix 62
AG8
D
118 122Right-handed 310
Helix 63
AG9
D
134 146Right-handed alpha
Helix 64
AH1
D
159 189Right-handed alpha
Helix 65
AH2
D
192 212Right-handed alpha
Helix 66
AH3
D
213 221Right-handed alpha
Helix 67
AH4
D
229 248Right-handed alpha
Helix 68
AH5
D
251 267Right-handed alpha
Helix 69
AH6
D
273 275Right-handed 310
Helix 70
AH7
D
276 282Right-handed alpha
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There are 4 sheets in PDB entry 8BK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
1 5parallel
Strand 3
A
58 61parallel
Strand 4
A
84 87parallel
Strand 5
A
109 115parallel
Strand 6
A
128 132anti-parallel
Strand 7
A
150 153parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
1 5parallel
Strand 3
B
58 61parallel
Strand 4
B
84 87parallel
Strand 5
B
109 115parallel
Strand 6
B
128 132anti-parallel
Strand 7
B
150 153parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
C
3 5parallel
Strand 3
C
58 61parallel
Strand 4
C
84 87parallel
Strand 5
C
109 115parallel
Strand 6
C
128 132anti-parallel
Strand 7
C
150 153parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 28first strand
Strand 2
D
1 5parallel
Strand 3
D
58 61parallel
Strand 4
D
84 87parallel
Strand 5
D
109 115parallel
Strand 6
D
128 132anti-parallel
Strand 7
D
150 153parallel
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