Analysis of interatomic Contacts of Structural Units in PDB entry:
8BL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BL8 entry

There are 5 chains in PDB entry 8BL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 31	TYR 477
B	ARG 31	TYR 477
C	ARG 31	GLN 476
D	ARG 31	GLN 476
E	ARG 31	TYR 477

There are 51 helices in PDB entry 8BL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	43	Right-handed alpha
Helix 2	AA2	A	98	103	Right-handed 310
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	163	166	Right-handed 310
Helix 5	AA5	A	192	198	Right-handed alpha
Helix 6	AA6	A	242	264	Right-handed alpha
Helix 7	AA7	A	270	292	Right-handed alpha
Helix 8	AA8	A	303	330	Right-handed alpha
Helix 9	AA9	A	444	477	Right-handed alpha
Helix 10	AB1	B	32	45	Right-handed alpha
Helix 11	AB2	B	98	103	Right-handed 310
Helix 12	AB3	B	113	115	Right-handed 310
Helix 13	AB4	B	163	166	Right-handed 310
Helix 14	AB5	B	192	198	Right-handed alpha
Helix 15	AB6	B	242	249	Right-handed alpha
Helix 16	AB7	B	249	264	Right-handed alpha
Helix 17	AB8	B	270	295	Right-handed alpha
Helix 18	AB9	B	303	329	Right-handed alpha
Helix 19	AC1	B	444	477	Right-handed alpha
Helix 20	AC2	C	32	43	Right-handed alpha
Helix 21	AC3	C	98	103	Right-handed 310
Helix 22	AC4	C	113	115	Right-handed 310
Helix 23	AC5	C	163	166	Right-handed 310
Helix 24	AC6	C	192	198	Right-handed alpha
Helix 25	AC7	C	242	249	Right-handed alpha
Helix 26	AC8	C	249	264	Right-handed alpha
Helix 27	AC9	C	270	293	Right-handed alpha
Helix 28	AD1	C	303	327	Right-handed alpha
Helix 29	AD2	C	447	476	Right-handed alpha
Helix 30	AD3	D	32	45	Right-handed alpha
Helix 31	AD4	D	98	103	Right-handed 310
Helix 32	AD5	D	113	115	Right-handed 310
Helix 33	AD6	D	163	166	Right-handed 310
Helix 34	AD7	D	192	199	Right-handed alpha
Helix 35	AD8	D	242	249	Right-handed alpha
Helix 36	AD9	D	249	262	Right-handed alpha
Helix 37	AE1	D	263	265	Right-handed 310
Helix 38	AE2	D	270	295	Right-handed alpha
Helix 39	AE3	D	303	330	Right-handed alpha
Helix 40	AE4	D	444	476	Right-handed alpha
Helix 41	AE5	E	32	43	Right-handed alpha
Helix 42	AE6	E	98	103	Right-handed 310
Helix 43	AE7	E	113	115	Right-handed 310
Helix 44	AE8	E	163	166	Right-handed 310
Helix 45	AE9	E	192	199	Right-handed alpha
Helix 46	AF1	E	242	249	Right-handed alpha
Helix 47	AF2	E	249	263	Right-handed alpha
Helix 48	AF3	E	264	266	Right-handed 310
Helix 49	AF4	E	270	293	Right-handed alpha
Helix 50	AF5	E	303	316	Right-handed alpha
Helix 51	AF6	E	444	477	Right-handed alpha

There are 16 sheets in PDB entry 8BL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	144	156	anti-parallel
Strand 4	A	125	127	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	144	156	anti-parallel
Strand 4	A	79	91	anti-parallel
Strand 5	A	59	74	anti-parallel
Strand 6	A	185	189	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	168	177	anti-parallel
Strand 3	A	229	240	anti-parallel
Strand 4	A	209	221	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	144	151	anti-parallel
Strand 4	B	79	91	anti-parallel
Strand 5	B	154	156	anti-parallel
Strand 6	B	125	127	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	111	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	144	151	anti-parallel
Strand 4	B	79	91	anti-parallel
Strand 5	B	59	74	anti-parallel
Strand 6	B	185	189	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	229	240	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	229	240	anti-parallel
Strand 4	B	209	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	144	156	anti-parallel
Strand 4	C	125	127	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	144	156	anti-parallel
Strand 4	C	79	91	anti-parallel
Strand 5	C	59	74	anti-parallel
Strand 6	C	185	189	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	168	177	anti-parallel
Strand 3	C	227	240	anti-parallel
Strand 4	C	209	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	144	156	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	144	156	anti-parallel
Strand 4	D	79	91	anti-parallel
Strand 5	D	59	74	anti-parallel
Strand 6	D	185	189	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	168	177	anti-parallel
Strand 3	D	229	240	anti-parallel
Strand 4	D	209	221	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	136	140	anti-parallel
Strand 3	E	144	156	anti-parallel
Strand 4	E	125	127	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	111	first strand
Strand 2	E	136	140	anti-parallel
Strand 3	E	144	156	anti-parallel
Strand 4	E	79	91	anti-parallel
Strand 5	E	59	74	anti-parallel
Strand 6	E	185	189	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	168	177	anti-parallel
Strand 3	E	227	240	anti-parallel
Strand 4	E	209	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BL8