Analysis of interatomic Contacts of Structural Units in PDB entry:
8BMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BMP entry

There are 4 chains in PDB entry 8BMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 281
B
 ALA 2LYS 282
C
 LYS 10SER 178
D
 ILE 5HIS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8BMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 54Right-handed alpha
Helix 2
AA2
A
101 113Right-handed alpha
Helix 3
AA3
A
116 131Right-handed alpha
Helix 4
AA4
A
140 144Right-handed 310
Helix 5
AA5
A
145 160Right-handed alpha
Helix 6
AA6
A
175 194Right-handed alpha
Helix 7
AA7
A
203 208Right-handed alpha
Helix 8
AA8
A
226 231Right-handed alpha
Helix 9
AA9
A
233 240Right-handed alpha
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
267 279Right-handed alpha
Helix 12
AB3
B
45 52Right-handed alpha
Helix 13
AB4
B
79 86Right-handed alpha
Helix 14
AB5
B
93 98Right-handed 310
Helix 15
AB6
B
102 114Right-handed alpha
Helix 16
AB7
B
119 132Right-handed alpha
Helix 17
AB8
B
147 161Right-handed alpha
Helix 18
AB9
B
177 194Right-handed alpha
Helix 19
AC1
B
204 212Right-handed alpha
Helix 20
AC2
B
228 233Right-handed alpha
Helix 21
AC3
B
235 242Right-handed alpha
Helix 22
AC4
B
247 259Right-handed alpha
Helix 23
AC5
B
269 281Right-handed alpha
Helix 24
AC6
C
12 30Right-handed alpha
Helix 25
AC7
C
43 75Right-handed alpha
Helix 26
AC8
C
82 101Right-handed alpha
Helix 27
AC9
C
106 121Right-handed alpha
Helix 28
AD1
C
124 134Right-handed alpha
Helix 29
AD2
C
137 144Right-handed alpha
Helix 30
AD3
C
145 152Right-handed alpha
Helix 31
AD4
C
152 172Right-handed alpha
Helix 32
AD5
D
14 19Right-handed 310
Helix 33
AD6
D
20 36Right-handed alpha
Helix 34
AD7
D
40 57Right-handed alpha
Helix 35
AD8
D
61 70Right-handed alpha
Helix 36
AD9
D
72 87Right-handed alpha
Helix 37
AE1
D
103 129Right-handed alpha
Helix 38
AE2
D
131 143Right-handed alpha
Helix 39
AE3
D
144 150Right-handed 310
Helix 40
AE4
D
152 183Right-handed alpha
Helix 41
AE5
D
191 199Right-handed alpha
Helix 42
AE6
D
199 225Right-handed alpha
Helix 43
AE7
D
245 263Right-handed alpha
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There are 6 sheets in PDB entry 8BMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
4 7anti-parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
72 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
164 168parallel
Strand 3
A
196 201parallel
Strand 4
A
36 39parallel
Strand 5
A
212 217parallel
Strand 6
A
220 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 30first strand
Strand 2
B
3 12anti-parallel
Strand 3
B
64 66anti-parallel
Strand 4
B
69 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
166 170parallel
Strand 3
B
197 201parallel
Strand 4
B
35 40parallel
Strand 5
B
214 219parallel
Strand 6
B
222 227anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
40 42anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 95first strand
Strand 2
D
100 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il